CAZyme3D

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Entry ID

Information for CAZyme ID: ACG24595.1

Basic Information

GenBank IDACG24595.1
FamilyGT17
Sequence Length388
UniProt IDB6SIB2(100,100)Download
Average pLDDT?89.44
CAZy50 ID52980
CAZy50 RepNo, CAE6101335.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4577
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusZea
SpeciesZea mays

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MEAGYCNRKK  TDGICESVCD  SEFGSKSVLS  MSRLKCALRG  FDLRVLLILL  IGVPILIFAI60
YVHGQKVTYF  LRPIWEKPPK  PFTILPHYYH  ENVSMGNLCK  LHGWKVRETP  RRVFDAVLFS120
NELDILDIRW  HELSPYVSEF  VLLESNSTFT  GIKKDLHFKE  NRQRFGFAES  RLTYGMIGGR180
FVKGENPFVE  ESYQRVALDQ  LIKIAGITDD  DLLIMSDVDE  IPSGHTIDLL  RWCDDVPEIL240
HLQLRNYLYS  FQFLLDDKSW  RASVHRYRAG  KTRYAHFRQT  DDLLADSGWH  CSFCFRYIND300
FIFKMKAYSH  VDRIRFKYFL  NPKRIQHVIC  EGADLFDMLP  EEYTFQEIIA  KLGPIPSTFS360
AVHLPAYLLE  QFDRYRYLLP  GNCVRESG388

Predicted 3D structure by AlphaFold2 with pLDDT = 89.44 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT17(93-380)

MEAGYCNRKK  TDGICESVCD  SEFGSKSVLS  MSRLKCALRG  FDLRVLLILL  IGVPILIFAI60
YVHGQKVTYF  LRPIWEKPPK  PFTILPHYYH  ENVSMGNLCK  LHGWKVRETP  RRVFDAVLFS120
NELDILDIRW  HELSPYVSEF  VLLESNSTFT  GIKKDLHFKE  NRQRFGFAES  RLTYGMIGGR180
FVKGENPFVE  ESYQRVALDQ  LIKIAGITDD  DLLIMSDVDE  IPSGHTIDLL  RWCDDVPEIL240
HLQLRNYLYS  FQFLLDDKSW  RASVHRYRAG  KTRYAHFRQT  DDLLADSGWH  CSFCFRYIND300
FIFKMKAYSH  VDRIRFKYFL  NPKRIQHVIC  EGADLFDMLP  EEYTFQEIIA  KLGPIPSTFS360
AVHLPAYLLE  QFDRYRYLLP  GNCVRESG388

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help