CAZyme3D

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Entry ID

Information for CAZyme ID: ACE86016.1

Basic Information

GenBank IDACE86016.1
FamilyGH13
Sequence Length565
UniProt IDB3PEE7(100,100)Download
Average pLDDT?93.98
CAZy50 ID11555
CAZy50 RepNo, ATX78282.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID498211
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderCellvibrionales
FamilyCellvibrionaceae
GenusCellvibrio
SpeciesCellvibrio japonicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MYKIMTKKSL  LALAALGLLS  SCASPPSANR  DATNLNAYGT  LNPFASEQIY  FLLTDRFVDG60
DPDNNQVNQG  GKYKTFNIPL  IGPEGKQANI  GYMGGDFKGI  INNAQYIKDM  GFTALWTTPI120
VDNPDEAFSG  GEPTKFGSVG  TDGGKTGYHG  YWGVNFYKVD  EHLESPDLAF  ADFTRILRED180
YDLKYVLDIV  ANHGSPSYSM  PVSQASMGKL  YDEQGRLVAD  HQNLYPDKLD  PNNPLHKFFN240
TQPGLAQLSD  INENNPEVLD  YFVNSYFKWI  DQGAYALRVD  TIKEMPHHFW  KKVADRIRER300
HPDMFMFGES  YSYEASFIAQ  HTRPENGGYS  VLDFPGRQAI  TSVFENDESD  YASILSYLHL360
KDGMYQNPYE  LVTFYDNHDM  ARMNASDRGF  VNANNWLFTS  RGIPCIYYGS  EANFSTGLKE420
HEGNRNYFGQ  ARVNAAKNHV  VHNNLTRIAH  VRKDNVSLQR  GLQVNLVFAG  NIASFYRIYQ480
QDGVNQTALV  VLNKGEAAES  VTLDKMLNSG  QWRDALSGKK  LQVSKKQKSL  TLDVPANGVR540
VLLLDAPITN  PDLIAEVKHS  MAALF565

Predicted 3D structure by AlphaFold2 with pLDDT = 93.98 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH13_2(94-412)

MYKIMTKKSL  LALAALGLLS  SCASPPSANR  DATNLNAYGT  LNPFASEQIY  FLLTDRFVDG60
DPDNNQVNQG  GKYKTFNIPL  IGPEGKQANI  GYMGGDFKGI  INNAQYIKDM  GFTALWTTPI120
VDNPDEAFSG  GEPTKFGSVG  TDGGKTGYHG  YWGVNFYKVD  EHLESPDLAF  ADFTRILRED180
YDLKYVLDIV  ANHGSPSYSM  PVSQASMGKL  YDEQGRLVAD  HQNLYPDKLD  PNNPLHKFFN240
TQPGLAQLSD  INENNPEVLD  YFVNSYFKWI  DQGAYALRVD  TIKEMPHHFW  KKVADRIRER300
HPDMFMFGES  YSYEASFIAQ  HTRPENGGYS  VLDFPGRQAI  TSVFENDESD  YASILSYLHL360
KDGMYQNPYE  LVTFYDNHDM  ARMNASDRGF  VNANNWLFTS  RGIPCIYYGS  EANFSTGLKE420
HEGNRNYFGQ  ARVNAAKNHV  VHNNLTRIAH  VRKDNVSLQR  GLQVNLVFAG  NIASFYRIYQ480
QDGVNQTALV  VLNKGEAAES  VTLDKMLNSG  QWRDALSGKK  LQVSKKQKSL  TLDVPANGVR540
VLLLDAPITN  PDLIAEVKHS  MAALF565

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help