CAZyme3D

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Entry ID

Information for CAZyme ID: ACC42908.1

Basic Information

GenBank IDACC42908.1
FamilyGT26
Sequence Length288
UniProt IDB2HDM4(100,100)Download
Average pLDDT?77.52
CAZy50 ID160370
CAZy50 RepNo, AGZ50348.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID216594
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderMycobacteriales
FamilyMycobacteriaceae
GenusMycobacterium
SpeciesMycobacterium marinum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MNQGIRSAPA  VRMAVSGTIV  ERREFDEVLS  IIASRLQSTS  QGCLSVGSVN  LDHLFHFRKI60
AAAPRGRLEW  LLLADGMPIA  WRGKLLTGEP  WPRIAGADLL  PSLLELAERS  GQRVGFFGGS120
AGTHRLLAES  LATRHPALAI  AGMWAPTAED  IESSSEHLAA  AIRNARTDIL  IVSLGKPRQE180
RWVDQYGCAT  GARVFLPCGG  AIDFLAGATN  RAPGWMQKAG  LEWLYRLASE  PRRLARRYLL240
QGPIALLRAA  RAQLIYYPHT  YCGGAPSSDH  VDIPAPVRDT  PQPEPATA288

Predicted 3D structure by AlphaFold2 with pLDDT = 77.52 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT26(70-237)

MNQGIRSAPA  VRMAVSGTIV  ERREFDEVLS  IIASRLQSTS  QGCLSVGSVN  LDHLFHFRKI60
AAAPRGRLEW  LLLADGMPIA  WRGKLLTGEP  WPRIAGADLL  PSLLELAERS  GQRVGFFGGS120
AGTHRLLAES  LATRHPALAI  AGMWAPTAED  IESSSEHLAA  AIRNARTDIL  IVSLGKPRQE180
RWVDQYGCAT  GARVFLPCGG  AIDFLAGATN  RAPGWMQKAG  LEWLYRLASE  PRRLARRYLL240
QGPIALLRAA  RAQLIYYPHT  YCGGAPSSDH  VDIPAPVRDT  PQPEPATA288

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help