CAZyme3D

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Entry ID

Information for CAZyme ID: ACA85442.1

Basic Information

GenBank IDACA85442.1
FamilyGH3
Sequence Length862
UniProt IDB1KHD4(100,100)Download
Average pLDDT?89.53
CAZy50 ID10057
CAZy50 RepNo, AWL11389.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID392500
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella woodyi

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSVLAYKRSL  LSITILAITM  TSGCSKEVAP  QKEDLEPKEG  LQSYAFGGKA  VDINIWPALE60
LPHRNSSEVE  GKVAEILAGM  TLEQKVAQMI  QPEIRDISVE  DMRQYGFGSY  LNGGGAYPNN120
DKHALPSDWI  ALAENMYQAS  VDASLDGSSI  PTMWGTDAVH  GHNNVIGATL  FPHNIGLGAA180
NNPELIREVA  AITAKEVMVT  GIDWVFAPTV  AVVRDDRWGR  TYEGYSEDPE  IVLAYSAAIV240
EGLQGEASGD  EFLSSEHVIS  TVKHFLGDGG  TEKGVDQGDN  LIDEQGLFDL  HGQGYVGGLV300
AGSQSVMASF  NSWHGVKNHG  NEYLLTDVLK  TRMGFDGFVV  GDWNGHGQVL  GCTNETCPQA360
VNAGLDMFMV  PTDAWKPLYE  NTIAEVRSGQ  ISQARIDDAV  SRILRVKVRA  GLFNKPSPAN420
RPLSGKLELI  GHESHRQVAK  QAVRESLVLL  KNGHNTLPLS  PKMRVLVAGD  GANNIGKQSG480
GWSITWQGTD  NQNSDFPGAS  SIYDGIKETV  LKAGGTATLD  IAGQYSEENR  PDVAIVVFGE540
EPYAEGNGDI  DNLEYQRGDK  RDLALLKRLK  SEGIPVVSIF  ITGRPLWVNP  ELNASDSFVV600
AWLPGSEGDA  VADVLFSSSD  GQVVNDMTGK  LSFSWPSTPM  QAVVNRFDKD  YQPLFKYGHG660
LSYADKGDSA  LVSEIKPVDS  DILRPLVILK  NAVKAPWRLS  IGTSADQDLI  NTSLQTSGPV720
VMRTIDRVVQ  EDARKFNLDG  KEQGVIRFGA  NFTRDLRAYE  QGNTAVSFDI  KLDEFTPQST780
QLSMVCDKAC  GVPVALEEKF  KQIAGTGWQT  ISVDLACFEL  SSDQLSKVQS  PFLFSSKAKI840
TMSLSNIYWL  PDYQGQPDVS  CH862

Predicted 3D structure by AlphaFold2 with pLDDT = 89.53 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH3(149-370)

MSVLAYKRSL  LSITILAITM  TSGCSKEVAP  QKEDLEPKEG  LQSYAFGGKA  VDINIWPALE60
LPHRNSSEVE  GKVAEILAGM  TLEQKVAQMI  QPEIRDISVE  DMRQYGFGSY  LNGGGAYPNN120
DKHALPSDWI  ALAENMYQAS  VDASLDGSSI  PTMWGTDAVH  GHNNVIGATL  FPHNIGLGAA180
NNPELIREVA  AITAKEVMVT  GIDWVFAPTV  AVVRDDRWGR  TYEGYSEDPE  IVLAYSAAIV240
EGLQGEASGD  EFLSSEHVIS  TVKHFLGDGG  TEKGVDQGDN  LIDEQGLFDL  HGQGYVGGLV300
AGSQSVMASF  NSWHGVKNHG  NEYLLTDVLK  TRMGFDGFVV  GDWNGHGQVL  GCTNETCPQA360
VNAGLDMFMV  PTDAWKPLYE  NTIAEVRSGQ  ISQARIDDAV  SRILRVKVRA  GLFNKPSPAN420
RPLSGKLELI  GHESHRQVAK  QAVRESLVLL  KNGHNTLPLS  PKMRVLVAGD  GANNIGKQSG480
GWSITWQGTD  NQNSDFPGAS  SIYDGIKETV  LKAGGTATLD  IAGQYSEENR  PDVAIVVFGE540
EPYAEGNGDI  DNLEYQRGDK  RDLALLKRLK  SEGIPVVSIF  ITGRPLWVNP  ELNASDSFVV600
AWLPGSEGDA  VADVLFSSSD  GQVVNDMTGK  LSFSWPSTPM  QAVVNRFDKD  YQPLFKYGHG660
LSYADKGDSA  LVSEIKPVDS  DILRPLVILK  NAVKAPWRLS  IGTSADQDLI  NTSLQTSGPV720
VMRTIDRVVQ  EDARKFNLDG  KEQGVIRFGA  NFTRDLRAYE  QGNTAVSFDI  KLDEFTPQST780
QLSMVCDKAC  GVPVALEEKF  KQIAGTGWQT  ISVDLACFEL  SSDQLSKVQS  PFLFSSKAKI840
TMSLSNIYWL  PDYQGQPDVS  CH862

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help