CAZyme3D

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Entry ID

Information for CAZyme ID: ACA31578.1

Basic Information

GenBank IDACA31578.1
FamilyGT52
Sequence Length311
UniProt IDB0UWB1(100,100)Download
Average pLDDT?87.28
CAZy50 ID151025
CAZy50 RepNo, QEH15342.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID228400
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPasteurellales
FamilyPasteurellaceae
GenusHistophilus
SpeciesHistophilus somni

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFREDNMNLI  ICCTPLQVII  AEKIIERYPE  QKFYGVMLES  FYNDKFDFYE  NKLKHLCHEF60
FCIKIARFKL  ERYKNLLSLL  KIKNKTFDRV  FLANIEKRYI  HIILSNIFFK  ELYTFDDGTA120
NIAPNSHLYQ  EYDHSLKKRI  TDILLPNHYN  SNKVKNISKL  HYSIYRCKNN  IIDNIEYMPL180
FNLEKKYTAQ  DKSISILLGQ  PIFYDEEKNI  RLIKEVIAKF  KIDYYFPHPR  EDYYIDNVSY240
IKTPLIFEEF  YAERSIENSI  KIYTFFSSAV  LNIVTKENID  RIYALKPKLT  EKAYLDCYDI300
LKDFGIKVID  I311

Predicted 3D structure by AlphaFold2 with pLDDT = 87.28 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT52(32-287)

MFREDNMNLI  ICCTPLQVII  AEKIIERYPE  QKFYGVMLES  FYNDKFDFYE  NKLKHLCHEF60
FCIKIARFKL  ERYKNLLSLL  KIKNKTFDRV  FLANIEKRYI  HIILSNIFFK  ELYTFDDGTA120
NIAPNSHLYQ  EYDHSLKKRI  TDILLPNHYN  SNKVKNISKL  HYSIYRCKNN  IIDNIEYMPL180
FNLEKKYTAQ  DKSISILLGQ  PIFYDEEKNI  RLIKEVIAKF  KIDYYFPHPR  EDYYIDNVSY240
IKTPLIFEEF  YAERSIENSI  KIYTFFSSAV  LNIVTKENID  RIYALKPKLT  EKAYLDCYDI300
LKDFGIKVID  I311

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help