CAZyme3D

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Entry ID

Information for CAZyme ID: ACA19868.1

Basic Information

GenBank IDACA19868.1
FamilyGH23
Sequence Length340
UniProt IDB0UAW5(100,100)Download
Average pLDDT?74.55
CAZy50 ID124624
CAZy50 RepNo, ABY28591.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID426117
KingdomBacteria
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyMethylobacteriaceae
GenusMethylobacterium
SpeciesMethylobacterium sp. 4-46

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MIEKLARVLL  AGVIGASLVA  APVQSAPSTA  TMETVGQALC  RIIESSARAR  GLPVPFLTRL60
IWRESGFRVG  ATSSAGAQGV  AQFMPGTSRE  RGLSDPFDPE  QAIPHAAHLL  ADLRKRFGNL120
GLAAAAYNGG  PTRVANWLVG  SGNLPAETRA  YVHAVTGRAA  EEWRPPAMAR  PDTLTGEISG180
AISPGEVGNT  RAVGKAAETG  EAKHAAPSTP  LAAAGRGAET  ALSCAQITAG  LRVPSRPERS240
SPLTPEPIVV  PPAPPPWGPW  GVQLAGNFSK  EQALESFART  RSAYAKVIGE  ARPMIIGTRL300
LSRGGGAFYR  VRMPAQSQAE  AAALCGKIRA  AGGACVVLKT  340

Predicted 3D structure by AlphaFold2 with pLDDT = 74.55 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(54-163)

MIEKLARVLL  AGVIGASLVA  APVQSAPSTA  TMETVGQALC  RIIESSARAR  GLPVPFLTRL60
IWRESGFRVG  ATSSAGAQGV  AQFMPGTSRE  RGLSDPFDPE  QAIPHAAHLL  ADLRKRFGNL120
GLAAAAYNGG  PTRVANWLVG  SGNLPAETRA  YVHAVTGRAA  EEWRPPAMAR  PDTLTGEISG180
AISPGEVGNT  RAVGKAAETG  EAKHAAPSTP  LAAAGRGAET  ALSCAQITAG  LRVPSRPERS240
SPLTPEPIVV  PPAPPPWGPW  GVQLAGNFSK  EQALESFART  RSAYAKVIGE  ARPMIIGTRL300
LSRGGGAFYR  VRMPAQSQAE  AAALCGKIRA  AGGACVVLKT  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help