CAZyme3D

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Entry ID

Information for CAZyme ID: ABY41961.1

Basic Information

GenBank IDABY41961.1
FamilyGH170
Sequence Length362
UniProt IDA9VFR5(100,100)Download
Average pLDDT?94.87
CAZy50 ID109692
CAZy50 RepNo, AIU03349.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID315730
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderBacillales
FamilyBacillaceae
GenusBacillus
SpeciesBacillus mycoides

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRRLGISIYP  EHSTVEKDKE  YVTLASKYGF  TRVFTCLLSV  DGEKEKIIEE  FKETISHANA60
LGFQVLVDIS  PSVFTQLGIS  YNDLSFFHEL  GAYGIRLDVG  FSGLEESIMT  YNPYGLKIEI120
NMSNGTKYVD  NIMSHRPNRE  NLIGCHNFYP  HRYSGLSYDH  FIKCSKQFKD  YGMRTAAFIS180
SFDATYGPWP  VTEGLCTLEQ  HRELPMTTQA  KHLFATELID  DVIIANAYAS  EEELQALGAL240
NKEKQTFDIE  LYDTTTDLER  IIVLEEPHFY  RGDVSEYMIR  STQSRVKYKK  EEFKPHNTRE300
IKRGDLLIDN  EQYGQYKGEL  QIALKDMVNT  GKTNVVGRII  EEEIFLLDYL  QAWDKFGFTL360
KK362

Predicted 3D structure by AlphaFold2 with pLDDT = 94.87 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH170(3-358)

MRRLGISIYP  EHSTVEKDKE  YVTLASKYGF  TRVFTCLLSV  DGEKEKIIEE  FKETISHANA60
LGFQVLVDIS  PSVFTQLGIS  YNDLSFFHEL  GAYGIRLDVG  FSGLEESIMT  YNPYGLKIEI120
NMSNGTKYVD  NIMSHRPNRE  NLIGCHNFYP  HRYSGLSYDH  FIKCSKQFKD  YGMRTAAFIS180
SFDATYGPWP  VTEGLCTLEQ  HRELPMTTQA  KHLFATELID  DVIIANAYAS  EEELQALGAL240
NKEKQTFDIE  LYDTTTDLER  IIVLEEPHFY  RGDVSEYMIR  STQSRVKYKK  EEFKPHNTRE300
IKRGDLLIDN  EQYGQYKGEL  QIALKDMVNT  GKTNVVGRII  EEEIFLLDYL  QAWDKFGFTL360
KK362

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help