CAZyme3D

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Entry ID

Information for CAZyme ID: ABW67788.1

Basic Information

GenBank IDABW67788.1
FamilyGH171
Sequence Length390
UniProt IDA8ZTA5(100,100)Download
Average pLDDT?95.91
CAZy50 ID89392
CAZy50 RepNo, CBX28523.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID96561
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfobacteria
OrderDesulfobacterales
FamilyDesulfosudaceae
GenusDesulfosudis
SpeciesDesulfosudis oleivorans

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTRPGIEIL  CESPGRWPLT  GRLGLLANPA  SVDGHLRHAR  DLLRETFPGR  LTALFSPQHG60
FFAEKQDNMV  ESAGFTDPDL  GIPVFSLYGD  TRIPTPEMMD  AIDTLVIDLQ  DAGTRVYTFI120
YTLSYCMEAA  RDHGKPVVVL  DRPNPINGIT  MEGNLLAPEW  ASFVGRYPLP  MRHGLTIGEL180
ARLFNDRFGI  GCDLTVVPMA  HWQRSMRFAD  TGLPWVAPSP  NLPTPDSALV  YPGQVIWEGT240
NISEGRGTTR  PFEYFGAPFL  DTHAVAARIQ  PEFLKGVVLR  PMVFEPTSSK  WQGVPCQGFQ300
IHPVAPDHYR  SYTLSLALLQ  VVINIHGDAF  AWKPPPYEYE  HERMPIDLIL  GDGNLRKRIE360
QQEEIFALEQ  EWHDDLESFK  TLSKNFHLYT  390

Predicted 3D structure by AlphaFold2 with pLDDT = 95.91 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH171(24-389)

MRTRPGIEIL  CESPGRWPLT  GRLGLLANPA  SVDGHLRHAR  DLLRETFPGR  LTALFSPQHG60
FFAEKQDNMV  ESAGFTDPDL  GIPVFSLYGD  TRIPTPEMMD  AIDTLVIDLQ  DAGTRVYTFI120
YTLSYCMEAA  RDHGKPVVVL  DRPNPINGIT  MEGNLLAPEW  ASFVGRYPLP  MRHGLTIGEL180
ARLFNDRFGI  GCDLTVVPMA  HWQRSMRFAD  TGLPWVAPSP  NLPTPDSALV  YPGQVIWEGT240
NISEGRGTTR  PFEYFGAPFL  DTHAVAARIQ  PEFLKGVVLR  PMVFEPTSSK  WQGVPCQGFQ300
IHPVAPDHYR  SYTLSLALLQ  VVINIHGDAF  AWKPPPYEYE  HERMPIDLIL  GDGNLRKRIE360
QQEEIFALEQ  EWHDDLESFK  TLSKNFHLYT  390

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help