CAZyme3D

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Entry ID

Information for CAZyme ID: ABV86840.1

Basic Information

GenBank IDABV86840.1
FamilyCBM0, CBM40, GH33
Sequence Length949
UniProt IDA8H2Q3(100,100)Download
Average pLDDT?87.22
CAZy50 ID16552
CAZy50 RepNo, UJF22921.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID398579
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderAlteromonadales
FamilyShewanellaceae
GenusShewanella
SpeciesShewanella pealeana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLRTITLTAL  FITLCSMGFS  SGYAQANTLV  ANFDAMNETS  PTIQGWSDFL  SGQATGSVAQ60
DLNAASWKST  GSSGRAQWNM  VPTTELNNEA  SLKGWRMSWT  SRVESGGYIT  DYYANGALRF120
LPILSISASG  DLVVNLVGGG  EHTLVSGTGA  DSYHQYVVEY  DPLTQLASFS  FDGVIIDPAW180
VGEASNQNMI  AWGNGSSNIN  GVAYYRAVTF  ETLSETVPEE  AKIIAAWDSS  GVTFDGESQF240
ISINTELASV  QQLARGSIFT  KFKATGTTAT  LFSASNSAVG  SSEFAILING  DGTLRVHARE300
NGSFVNDSKT  VTTFNNNQEH  KALIMVDANG  TQIYVDGRLA  FSGNATSFLS  AIAGLDSMNI360
GRNHDSNGGQ  WYFSGTIDET  RIYDNVLTAE  QAEDLTRLST  VVATFDSNLN  TDPLLAGWTN420
DSVDSGAGSL  VNEQGQAAWQ  ARGINGRAEW  EIQPSVQVNR  DATTLGWKMT  TTSRIVSGSA480
ISDYYANGNK  RFLALLSING  NGDLVAALEG  GSSHTLVPMT  GADKYHTYEV  TYDVETSLAT540
FYFDGIAIET  WAGSATSQNV  IVWGNGSSGT  NGVANYRYVN  FETFGSGPAI  FESIVFQGGQ600
EGDDGMSHYR  IPSMVQSADG  SILAFIEGRP  SGGDPGQVGQ  INISLKRSID  NGRSWLPVQI660
IHQDPAFDYS  DPRPFVDKST  NTVYVFYVQW  PDLCAQNGNC  VAPDDANYLY  YRKSIDNGLT720
WSAAVDVTSQ  VKDPTWRSIN  PGPGQGIQLQ  WQTLAQGEHN  GRMIFPAIVR  AGNSLFYVAT780
VFSDDNGLTW  HKGEFTPVSG  PTEADMVELN  DGTLLLSARN  DGGAAGTRYH  FLSHDGGITW840
TQTSHDLAVS  KVDIGLTRFS  AIRAGDAEDL  IIATAPIGTT  SGPNRNNLGI  WVSTDEGANF900
GTPHQLVYGM  SAYSDVVRLN  DGSIGVIYEA  TGSTLLKFLN  FELSSLERQ949

Predicted 3D structure by AlphaFold2 with pLDDT = 87.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM40(235-399)+GH33(595-934)

MLRTITLTAL  FITLCSMGFS  SGYAQANTLV  ANFDAMNETS  PTIQGWSDFL  SGQATGSVAQ60
DLNAASWKST  GSSGRAQWNM  VPTTELNNEA  SLKGWRMSWT  SRVESGGYIT  DYYANGALRF120
LPILSISASG  DLVVNLVGGG  EHTLVSGTGA  DSYHQYVVEY  DPLTQLASFS  FDGVIIDPAW180
VGEASNQNMI  AWGNGSSNIN  GVAYYRAVTF  ETLSETVPEE  AKIIAAWDSS  GVTFDGESQF240
ISINTELASV  QQLARGSIFT  KFKATGTTAT  LFSASNSAVG  SSEFAILING  DGTLRVHARE300
NGSFVNDSKT  VTTFNNNQEH  KALIMVDANG  TQIYVDGRLA  FSGNATSFLS  AIAGLDSMNI360
GRNHDSNGGQ  WYFSGTIDET  RIYDNVLTAE  QAEDLTRLST  VVATFDSNLN  TDPLLAGWTN420
DSVDSGAGSL  VNEQGQAAWQ  ARGINGRAEW  EIQPSVQVNR  DATTLGWKMT  TTSRIVSGSA480
ISDYYANGNK  RFLALLSING  NGDLVAALEG  GSSHTLVPMT  GADKYHTYEV  TYDVETSLAT540
FYFDGIAIET  WAGSATSQNV  IVWGNGSSGT  NGVANYRYVN  FETFGSGPAI  FESIVFQGGQ600
EGDDGMSHYR  IPSMVQSADG  SILAFIEGRP  SGGDPGQVGQ  INISLKRSID  NGRSWLPVQI660
IHQDPAFDYS  DPRPFVDKST  NTVYVFYVQW  PDLCAQNGNC  VAPDDANYLY  YRKSIDNGLT720
WSAAVDVTSQ  VKDPTWRSIN  PGPGQGIQLQ  WQTLAQGEHN  GRMIFPAIVR  AGNSLFYVAT780
VFSDDNGLTW  HKGEFTPVSG  PTEADMVELN  DGTLLLSARN  DGGAAGTRYH  FLSHDGGITW840
TQTSHDLAVS  KVDIGLTRFS  AIRAGDAEDL  IIATAPIGTT  SGPNRNNLGI  WVSTDEGANF900
GTPHQLVYGM  SAYSDVVRLN  DGSIGVIYEA  TGSTLLKFLN  FELSSLERQ949

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help