CAZyme3D

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Entry ID

Information for CAZyme ID: ABU25226.1

Basic Information

GenBank IDABU25226.1
FamilyCBM18, GH19
Sequence Length326
UniProt IDA7UC81(100,100)Download
Average pLDDT?89.33
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID39946
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusOryza
SpeciesOryza sativa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRALAVVAMV  ATAFLAAAVH  AEQCGSQAGG  AVCPNCLCCS  QFGWCGSTSD  YCGAGCQSQC60
SAAGCGGGGP  TPPSGGGGSG  VASIVSRSLF  DQMLLHRNDA  ACPASNFYTY  DAFVAAASAF120
PGFAAAGGDA  DTNKREVAAF  LAQTSHETTG  GWATAPDGPY  TWGYCFKEEN  GGAAGPDYCQ180
QSAQWPCAAG  KKYYGRGPIQ  LSYNFNYGPA  GQAIGADLLG  DPDLVASDAT  VSFDTAFWFW240
MAPQSPKPSC  HAVATGQWTP  SADDQAAGRV  PGYGVITNII  NGGLECGHGE  DDRVAVRIGF300
YKRYCDILGV  SYGANLDCYG  QRPFGS326

Predicted 3D structure by AlphaFold2 with pLDDT = 89.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(23-60)+GH19(81-318)

MRALAVVAMV  ATAFLAAAVH  AEQCGSQAGG  AVCPNCLCCS  QFGWCGSTSD  YCGAGCQSQC60
SAAGCGGGGP  TPPSGGGGSG  VASIVSRSLF  DQMLLHRNDA  ACPASNFYTY  DAFVAAASAF120
PGFAAAGGDA  DTNKREVAAF  LAQTSHETTG  GWATAPDGPY  TWGYCFKEEN  GGAAGPDYCQ180
QSAQWPCAAG  KKYYGRGPIQ  LSYNFNYGPA  GQAIGADLLG  DPDLVASDAT  VSFDTAFWFW240
MAPQSPKPSC  HAVATGQWTP  SADDQAAGRV  PGYGVITNII  NGGLECGHGE  DDRVAVRIGF300
YKRYCDILGV  SYGANLDCYG  QRPFGS326

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help