CAZyme3D

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Entry ID

Information for CAZyme ID: ABS45821.1

Basic Information

GenBank IDABS45821.1
FamilyCBM50, GH23
Sequence Length459
UniProt IDA0A0U1QTV5(100,100)Download
Average pLDDT?77.21
CAZy50 ID65563
CAZy50 RepNo, QBH95679.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID349747
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyYersiniaceae
GenusYersinia
SpeciesYersinia pseudotuberculosis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKTKAILLAS  VLLVGCQTSK  QDAQAPEQHA  QSLSSAGEAG  EYTNSTREGS  ARWLESESSY60
AQQDLWNFIK  DELKMKVPEN  SRIREQKQKY  LKNKSYLHDV  TLRAEPYMYL  IVEQIKKRKM120
PMELVLLPIV  ESAFDPHATS  SANAAGLWQI  VPSTGRNYGL  KQNQWYDGRR  DVVASTKAAL180
DILERLNKMF  NGDWLLTVAA  YNSGEGRVMQ  AIKANKAKGK  PTDFWALSLP  RETSIYVPKM240
LALGDLLKNS  KKYGITLPET  DKDRALARVD  VDQQIELTQA  AEMAGMSLTK  LKSFNSGYKR300
NVTAPDGHGP  RYIMLPKAHA  EQLKDSLADT  DITAVQPTKL  ATNSTKSASS  SQYKVRPGDT360
LSTIAKRLNI  KTSDLQSWNN  LRAKSTLKVG  QTLQLASNTT  SKSITYQVRK  GDSFASIAKR420
HGVNTDDVMR  WNSVVSKANN  LQPGLKLTLF  VNDKSTPEA459

Predicted 3D structure by AlphaFold2 with pLDDT = 77.21 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH23(109-245)+CBM50(353-395)+CBM50(406-449)

MKTKAILLAS  VLLVGCQTSK  QDAQAPEQHA  QSLSSAGEAG  EYTNSTREGS  ARWLESESSY60
AQQDLWNFIK  DELKMKVPEN  SRIREQKQKY  LKNKSYLHDV  TLRAEPYMYL  IVEQIKKRKM120
PMELVLLPIV  ESAFDPHATS  SANAAGLWQI  VPSTGRNYGL  KQNQWYDGRR  DVVASTKAAL180
DILERLNKMF  NGDWLLTVAA  YNSGEGRVMQ  AIKANKAKGK  PTDFWALSLP  RETSIYVPKM240
LALGDLLKNS  KKYGITLPET  DKDRALARVD  VDQQIELTQA  AEMAGMSLTK  LKSFNSGYKR300
NVTAPDGHGP  RYIMLPKAHA  EQLKDSLADT  DITAVQPTKL  ATNSTKSASS  SQYKVRPGDT360
LSTIAKRLNI  KTSDLQSWNN  LRAKSTLKVG  QTLQLASNTT  SKSITYQVRK  GDSFASIAKR420
HGVNTDDVMR  WNSVVSKANN  LQPGLKLTLF  VNDKSTPEA459

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help