CAZyme3D

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Entry ID

Information for CAZyme ID: ABS42075.1

Basic Information

GenBank IDABS42075.1
FamilyCBM50, GH18
Sequence Length504
UniProt IDA7GCQ0(100,100)Download
Average pLDDT?93.85
CAZy50 ID50810
CAZy50 RepNo, AZV44884.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID441772
KingdomBacteria
PhylumBacillota
ClassClostridia
OrderEubacteriales
FamilyClostridiaceae
GenusClostridium
SpeciesClostridium botulinum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWRQPNISYI  VKPGDSLFTI  ARSYGITVEQ  LKEYNGLVSN  DLYVGQQIFI  PISIYKVQRG60
DSLYYIAKKF  DTTVESLMVL  NNLDSINLNI  GQILYIPLYT  EAIMKVEDGN  IRSQPSINSK120
ILYKMAKGAK  LPIIGVYKDF  YKIKLFNGNE  GFVSKAIVDF  KTYGNMKPVV  AVDGFYTLEE180
GETLPSSYES  FVTNINLISE  ICLFMFRIDP  SDATAIEKFG  DFTDEYVKEL  VNIAHRNNVR240
VLAVVHNLLY  RPGGTTKAKD  LVKSLVSTRE  NRQIFINNLI  SLIEKYNFDG  VNIDIEDVYI300
EDKDNLSSLY  LEMGREFRRK  GYFLSASIPS  RVSDEPFNPF  SDPFDYRIIG  SAVDEFIVML360
YNEHGWPGSG  PGPVVSIGWM  NRVLNYTITR  VPRNKVVAAV  SVFGFDFNLT  TGRNTYVTYA420
GAIEIAKRYG  KDIIFDEETK  TPMFSYVDES  GNNHEVWFEN  AESIYAKAEL  AFNKGIKGIA480
LWRLGMEDNK  IWDSMKKDIV  VKMA504

Predicted 3D structure by AlphaFold2 with pLDDT = 93.85 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM50(9-51)+CBM50(55-97)+GH18(211-490)

MWRQPNISYI  VKPGDSLFTI  ARSYGITVEQ  LKEYNGLVSN  DLYVGQQIFI  PISIYKVQRG60
DSLYYIAKKF  DTTVESLMVL  NNLDSINLNI  GQILYIPLYT  EAIMKVEDGN  IRSQPSINSK120
ILYKMAKGAK  LPIIGVYKDF  YKIKLFNGNE  GFVSKAIVDF  KTYGNMKPVV  AVDGFYTLEE180
GETLPSSYES  FVTNINLISE  ICLFMFRIDP  SDATAIEKFG  DFTDEYVKEL  VNIAHRNNVR240
VLAVVHNLLY  RPGGTTKAKD  LVKSLVSTRE  NRQIFINNLI  SLIEKYNFDG  VNIDIEDVYI300
EDKDNLSSLY  LEMGREFRRK  GYFLSASIPS  RVSDEPFNPF  SDPFDYRIIG  SAVDEFIVML360
YNEHGWPGSG  PGPVVSIGWM  NRVLNYTITR  VPRNKVVAAV  SVFGFDFNLT  TGRNTYVTYA420
GAIEIAKRYG  KDIIFDEETK  TPMFSYVDES  GNNHEVWFEN  AESIYAKAEL  AFNKGIKGIA480
LWRLGMEDNK  IWDSMKKDIV  VKMA504

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help