CAZyme3D

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Entry ID

Information for CAZyme ID: ABR44729.1

Basic Information

GenBank IDABR44729.1
FamilyGH2
Sequence Length1207
UniProt IDA6LGB5(100,100)Download
Average pLDDT?92.96
CAZy50 ID7562
CAZy50 RepNo, WFE85554.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID435591
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyTannerellaceae
GenusParabacteroides
SpeciesParabacteroides distasonis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRTFSKKKKL  PRLLTLCGAV  AVSALLGGCG  QSGVPAESFD  RSDYYTRGIG  SYPGDPGEDF60
SPSLRPDYST  YRNIALLRSA  YNSSSYDYNL  TAQLVTDGVI  SDKQPQYLDL  STQNGDIARR120
EREWMIDQGP  YSRNAVTGED  AYFLFTLNNW  KEKADKVQFR  GSVAYDENKI  KDGYEIVCEG180
SNDGNTWTEL  AALKGKGMPG  KASKYKAHSD  PNKNSWDPGT  LPTRMLNETL  TFDQPGEYAY240
YRMRLKMEGA  AYWAFFEMNF  YNQDKLIDLL  PSKFFNSAWM  SATTGEEWVY  VDLGSQSEFD300
KVKLHWINKA  IKGKIQVSDD  AKQWVDIANL  PGGDANLDEI  KLKGKGRYVR  VWMEQPANDG360
RYILSEIEVM  GKGGLLAQPA  AAPAATKDEI  RLSGGNWKVQ  RASEVTASGE  EISKPSFSPE420
NWIVATVPGT  VLSSYKNIGA  IPNPNYADNL  MQISESFFNS  NFWYRDEFEV  PEGFKQDRLF480
LNFDGINWKA  NVYLNGNKIG  RIEGAFIRGV  FDVTDRVVPG  KNVVAVEIIK  NEHIGAIKEK540
CEKNTDFNGG  ILGADNPTFH  ASIGWDWIST  IRGRNIGIWD  DVYLTSTGKV  TIQDPFVQVV600
LPLPDTTSAT  LTPEVIVKNH  DAAPVKGVLT  GKIGDITFEQ  PVELAANEEK  TVTFDPNSFS660
QLKVQNPRLW  WPKGYGSPYL  YDANFTFKVG  DKVSDSEDFK  VGIRQMTFNE  NNSILSLFIN720
GRRFIGRGGN  WGFGESNLNY  RGREYDIAVA  YHADMNFTMM  RNWVGQIGDK  ELYEACDRHG780
IMIWQDFWLA  NPSDGPDPYD  PEMFIANAED  YVKRFRNHAS  IGIYCGRNEG  FPPEQIDKAL840
RRIVKEDHPG  LHYISSSADE  VVSGHGPYRA  LPVKEYFSLK  NGSDKFHSER  GMPNVMNYES900
LVRTFSPEAL  WPQNAQWGQH  DYTMEGAQSC  ASFNAIIEKG  FGKPNNAKEF  ADLAQWVNYD960
GYRGMFESRS  LNRKGLLLWM  THPAWPSMVW  QTYDYYFEPT  AAYFGCKKAS  EPLHIQWNPV1020
TDEIEVVNYS  AGVRNGLTAK  AQIINMDGSI  SWENEVSVDS  KEDTTNKCMK  LDFPASVSSA1080
HFVKLTLTEN  GKIVSDNFYL  RGVEEGNYQA  LREMPKVTLR  SNVATNKGND  GTWTATATLE1140
NTSSTPALMI  RVNVVGEKDG  EQFLPMFYSD  NYFSLLPGEK  KEINIHWKDV  DTRGETPKVV1200
ISGYNVN1207

Predicted 3D structure by AlphaFold2 with pLDDT = 92.96 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM32(153-257)+CBM32(264-359)+GH2(387-1078)

MRTFSKKKKL  PRLLTLCGAV  AVSALLGGCG  QSGVPAESFD  RSDYYTRGIG  SYPGDPGEDF60
SPSLRPDYST  YRNIALLRSA  YNSSSYDYNL  TAQLVTDGVI  SDKQPQYLDL  STQNGDIARR120
EREWMIDQGP  YSRNAVTGED  AYFLFTLNNW  KEKADKVQFR  GSVAYDENKI  KDGYEIVCEG180
SNDGNTWTEL  AALKGKGMPG  KASKYKAHSD  PNKNSWDPGT  LPTRMLNETL  TFDQPGEYAY240
YRMRLKMEGA  AYWAFFEMNF  YNQDKLIDLL  PSKFFNSAWM  SATTGEEWVY  VDLGSQSEFD300
KVKLHWINKA  IKGKIQVSDD  AKQWVDIANL  PGGDANLDEI  KLKGKGRYVR  VWMEQPANDG360
RYILSEIEVM  GKGGLLAQPA  AAPAATKDEI  RLSGGNWKVQ  RASEVTASGE  EISKPSFSPE420
NWIVATVPGT  VLSSYKNIGA  IPNPNYADNL  MQISESFFNS  NFWYRDEFEV  PEGFKQDRLF480
LNFDGINWKA  NVYLNGNKIG  RIEGAFIRGV  FDVTDRVVPG  KNVVAVEIIK  NEHIGAIKEK540
CEKNTDFNGG  ILGADNPTFH  ASIGWDWIST  IRGRNIGIWD  DVYLTSTGKV  TIQDPFVQVV600
LPLPDTTSAT  LTPEVIVKNH  DAAPVKGVLT  GKIGDITFEQ  PVELAANEEK  TVTFDPNSFS660
QLKVQNPRLW  WPKGYGSPYL  YDANFTFKVG  DKVSDSEDFK  VGIRQMTFNE  NNSILSLFIN720
GRRFIGRGGN  WGFGESNLNY  RGREYDIAVA  YHADMNFTMM  RNWVGQIGDK  ELYEACDRHG780
IMIWQDFWLA  NPSDGPDPYD  PEMFIANAED  YVKRFRNHAS  IGIYCGRNEG  FPPEQIDKAL840
RRIVKEDHPG  LHYISSSADE  VVSGHGPYRA  LPVKEYFSLK  NGSDKFHSER  GMPNVMNYES900
LVRTFSPEAL  WPQNAQWGQH  DYTMEGAQSC  ASFNAIIEKG  FGKPNNAKEF  ADLAQWVNYD960
GYRGMFESRS  LNRKGLLLWM  THPAWPSMVW  QTYDYYFEPT  AAYFGCKKAS  EPLHIQWNPV1020
TDEIEVVNYS  AGVRNGLTAK  AQIINMDGSI  SWENEVSVDS  KEDTTNKCMK  LDFPASVSSA1080
HFVKLTLTEN  GKIVSDNFYL  RGVEEGNYQA  LREMPKVTLR  SNVATNKGND  GTWTATATLE1140
NTSSTPALMI  RVNVVGEKDG  EQFLPMFYSD  NYFSLLPGEK  KEINIHWKDV  DTRGETPKVV1200
ISGYNVN1207

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help