CAZyme3D

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Entry ID

Information for CAZyme ID: ABN05321.1

Basic Information

GenBank IDABN05321.1
FamilyCBM48, GH13_8
Sequence Length838
UniProt IDA2TIS0(100,100)Download
Average pLDDT?84.33
CAZy50 ID937
CAZy50 RepNo, CAG7908015.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3694
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderMalpighiales
FamilySalicaceae
GenusPopulus
SpeciesPopulus trichocarpa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLGSSSGLLP  APPLLPSVAE  NSKWAIRYKR  CTAKEKPVRL  PSGGSKKLLC  HSRFCFPLRI60
SNNDRVRHGF  AISAVLTDDP  TMTTVGDGLE  NIGLVSIDPG  LESFKDHFRY  RMKRYVDQKK120
LIERYEGGLE  EFALGYQKFG  FNRDEGGIVY  REWAPAAQEA  QIIGDFNGWD  GSNHRMEKNE180
FGVWSIKIPD  SGGNPAIPHN  SRVKFRFMQG  NGVWVDRIPA  WIKCATVDPA  SFGAPYDGVY240
WDPPTSERYE  FKFPRPPKPN  APRIYEAHVG  MSSSEPRVNS  YREFADNVLP  RIRANNYNTV300
QLMAVIEHSY  YASFGYHVTN  FFAVSSRSGN  PEDLKYLIDK  AHSLGLRVLM  DVVHSHASNN360
VTDGLNGFDI  GQGAQESYFH  TGDRGYHNLW  DSRLFNYANW  EVLRFLLSNL  RWWLEEFKFD420
GFRFDGVTSM  LYHHHGINMA  FTGDYNEYFS  EATDVDAVVY  LMLANYLIHN  ILPDATVIAE480
DVSGMPGLGC  PVSEGGVGFD  YRLAMAIPDK  WIDYLKNKSD  LEWSMNEISR  SLTNRRYTEK540
CVAYAESHDQ  SIVGDKTIAF  ILMDKEMYSG  MSCLTEAPPA  VDRGIALHKM  IHFITMALGG600
EGYLNFMGNE  FGHPEWIDFP  REGNGWSYEM  CRRQWNLADM  EHLRYKFMNA  FDRAMNLLDE660
KYSFLASTKQ  IVSSTNEEDK  VIVFERGDLV  FVFNFHPEKT  YDGYKVGCDL  PGKYRVALDS720
DALEFGGHGR  VGHDADHFTS  PEGIPGVPET  NFNNRPNSFK  VLSPARTCVV  YYRVEESEES780
HDDDDEMGLN  EILAADVIPE  QEDVEEAASQ  AKVGKPHLVD  GDGDGDGEWV  MVVDLARQ838

Predicted 3D structure by AlphaFold2 with pLDDT = 84.33 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM48(138-229)+GH13_8(313-609)

MLGSSSGLLP  APPLLPSVAE  NSKWAIRYKR  CTAKEKPVRL  PSGGSKKLLC  HSRFCFPLRI60
SNNDRVRHGF  AISAVLTDDP  TMTTVGDGLE  NIGLVSIDPG  LESFKDHFRY  RMKRYVDQKK120
LIERYEGGLE  EFALGYQKFG  FNRDEGGIVY  REWAPAAQEA  QIIGDFNGWD  GSNHRMEKNE180
FGVWSIKIPD  SGGNPAIPHN  SRVKFRFMQG  NGVWVDRIPA  WIKCATVDPA  SFGAPYDGVY240
WDPPTSERYE  FKFPRPPKPN  APRIYEAHVG  MSSSEPRVNS  YREFADNVLP  RIRANNYNTV300
QLMAVIEHSY  YASFGYHVTN  FFAVSSRSGN  PEDLKYLIDK  AHSLGLRVLM  DVVHSHASNN360
VTDGLNGFDI  GQGAQESYFH  TGDRGYHNLW  DSRLFNYANW  EVLRFLLSNL  RWWLEEFKFD420
GFRFDGVTSM  LYHHHGINMA  FTGDYNEYFS  EATDVDAVVY  LMLANYLIHN  ILPDATVIAE480
DVSGMPGLGC  PVSEGGVGFD  YRLAMAIPDK  WIDYLKNKSD  LEWSMNEISR  SLTNRRYTEK540
CVAYAESHDQ  SIVGDKTIAF  ILMDKEMYSG  MSCLTEAPPA  VDRGIALHKM  IHFITMALGG600
EGYLNFMGNE  FGHPEWIDFP  REGNGWSYEM  CRRQWNLADM  EHLRYKFMNA  FDRAMNLLDE660
KYSFLASTKQ  IVSSTNEEDK  VIVFERGDLV  FVFNFHPEKT  YDGYKVGCDL  PGKYRVALDS720
DALEFGGHGR  VGHDADHFTS  PEGIPGVPET  NFNNRPNSFK  VLSPARTCVV  YYRVEESEES780
HDDDDEMGLN  EILAADVIPE  QEDVEEAASQ  AKVGKPHLVD  GDGDGDGEWV  MVVDLARQ838

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help