CAZyme3D

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Entry ID

Information for CAZyme ID: ABM29137.1

Basic Information

GenBank IDABM29137.1
FamilyGT4
Sequence Length372
UniProt IDA0A0H3ABQ3(100,100)Download
Average pLDDT?93.69
CAZy50 ID103276
CAZy50 RepNo, ABB37919.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID391774
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKGQTSPRLV  LHIAPSMGCG  GTEKVLQSLA  CHMDATRYTC  AVWSPQDGPR  SAMLREAGVV60
VHIGGDPGMW  ARRLKADIVH  IHRGGWPTPA  LLRALRAACR  TTQAGLTLPR  FIETNVFGRH120
DPSAAARCID  RTLFVSHFCA  RRYAAVHGIP  ATPPRYDVLY  NPVDTGVFIK  GTPPPAARDY180
SRPVIGRLSR  PDPGKWSRLA  LDFLPLLRGE  LHDFRYLVVG  GIPEAESFVS  DHGLGEHVRF240
MPPLLDDKEL  AAFYGRLSVF  AHANDTGESF  GLAIAEAMSA  ALPVVTHPCP  ELRDNAQLEL300
VQHGVTGIVA  GNAEEYAAAI  LWLLRNPAVA  RRMGEAGRQK  AVELFDIRRI  AQRAADIYDD360
VLAHAGRNIP  EG372

Predicted 3D structure by AlphaFold2 with pLDDT = 93.69 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(181-335)

MKGQTSPRLV  LHIAPSMGCG  GTEKVLQSLA  CHMDATRYTC  AVWSPQDGPR  SAMLREAGVV60
VHIGGDPGMW  ARRLKADIVH  IHRGGWPTPA  LLRALRAACR  TTQAGLTLPR  FIETNVFGRH120
DPSAAARCID  RTLFVSHFCA  RRYAAVHGIP  ATPPRYDVLY  NPVDTGVFIK  GTPPPAARDY180
SRPVIGRLSR  PDPGKWSRLA  LDFLPLLRGE  LHDFRYLVVG  GIPEAESFVS  DHGLGEHVRF240
MPPLLDDKEL  AAFYGRLSVF  AHANDTGESF  GLAIAEAMSA  ALPVVTHPCP  ELRDNAQLEL300
VQHGVTGIVA  GNAEEYAAAI  LWLLRNPAVA  RRMGEAGRQK  AVELFDIRRI  AQRAADIYDD360
VLAHAGRNIP  EG372

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help