CAZyme3D

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Entry ID

Information for CAZyme ID: ABK40520.1

Basic Information

GenBank IDABK40520.1
FamilyGH5_9
Sequence Length427
UniProt IDA0MPR7(100,100)Download
Average pLDDT?92.75
CAZy50 ID79520
CAZy50 RepNo, CCE65233.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4927
KingdomEukaryota
PhylumAscomycota
ClassSaccharomycetes
OrderSaccharomycetales
FamilyPhaffomycetaceae
GenusWickerhamomyces
SpeciesWickerhamomyces anomalus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLISTFIISS  LLSIALANPI  PSRGGTQFYK  RGDYWDYQND  KIRGVNLGGW  FVLEPFITPS60
LFEAFENQGQ  DVPVDEYHYT  KALGKDLAIE  RLDQHWSSWI  VEADFQSIAG  AGLNFVRIPI120
GYWAFQLLDN  DPYVQGQESY  LDQALEWAKK  YDIKVWIDLH  GAPGSQNGFD  NSGLRDSYEF180
QNGDNTQVAL  DVLQYISNKY  GGSDYGDVVI  GIELLNEPLG  SVLDMGKLND  FWQQGYHNLR240
NTGSSQNVII  HDAFQTWDYF  NDKFHTPDYW  NVVIDHHHYQ  VFSPGELSRS  VDEHVKVACE300
WGANSTKENH  WNLCGEWSAA  MTDCTKWLNG  VGRGSRYDQT  FDYDPSQNQN  YIGSCQGSQD360
ISTWDDDKKS  NYRRYIEAQL  DAFEKRSGWI  FWTWKTETTL  EWDFQKLSYY  GIFPSPLNSR420
QYPGQCD427

Predicted 3D structure by AlphaFold2 with pLDDT = 92.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_9(94-397)

MLISTFIISS  LLSIALANPI  PSRGGTQFYK  RGDYWDYQND  KIRGVNLGGW  FVLEPFITPS60
LFEAFENQGQ  DVPVDEYHYT  KALGKDLAIE  RLDQHWSSWI  VEADFQSIAG  AGLNFVRIPI120
GYWAFQLLDN  DPYVQGQESY  LDQALEWAKK  YDIKVWIDLH  GAPGSQNGFD  NSGLRDSYEF180
QNGDNTQVAL  DVLQYISNKY  GGSDYGDVVI  GIELLNEPLG  SVLDMGKLND  FWQQGYHNLR240
NTGSSQNVII  HDAFQTWDYF  NDKFHTPDYW  NVVIDHHHYQ  VFSPGELSRS  VDEHVKVACE300
WGANSTKENH  WNLCGEWSAA  MTDCTKWLNG  VGRGSRYDQT  FDYDPSQNQN  YIGSCQGSQD360
ISTWDDDKKS  NYRRYIEAQL  DAFEKRSGWI  FWTWKTETTL  EWDFQKLSYY  GIFPSPLNSR420
QYPGQCD427

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help