CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ABJ10406.1

Basic Information

GenBank IDABJ10406.1
FamilyGH102
Sequence Length385
UniProt IDA0A0H2Z8H2(100,100)Download
Average pLDDT?89.40
CAZy50 ID86704
CAZy50 RepNo, QZX85945.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID208963
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas aeruginosa

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKFPFHPWRR  LLLCALPFAA  LLTACDDGKK  EPPPKPAEVT  TYNSVPWDAL  PATSDADLLA60
GFNAWRSACA  RLAKDPVWGE  PCASATTVAA  DPTAVRAFLQ  ERMQVYSLRS  SSNGDQGLIT120
GYYEPVYHGS  LSQGEKNPVP  IYGVPDDLVV  VALESVYPEL  KGKRLRGRLE  GRVLKPYDDA180
ATIRDNGSSA  PVLAWLGDPM  DLQFLQIQGS  GRIQLEDGRQ  LRIGYGDQNG  HPYKPVGRWL240
VEQGLVPKEE  ISMKRIRDWA  EANPQRVSEL  LASNPSFVFF  SLRPDSDEGP  RGSLNVPLTD300
GYSVAIDRKV  IPLGSLMWLS  TTRPDDGSAV  VRPVAAQDTG  GAIVGEVRAD  LFWGTGDAAG360
ELAGHMKQPG  RLWLLWPKGA  PLPAS385

Predicted 3D structure by AlphaFold2 with pLDDT = 89.40 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH102(128-280)

MKFPFHPWRR  LLLCALPFAA  LLTACDDGKK  EPPPKPAEVT  TYNSVPWDAL  PATSDADLLA60
GFNAWRSACA  RLAKDPVWGE  PCASATTVAA  DPTAVRAFLQ  ERMQVYSLRS  SSNGDQGLIT120
GYYEPVYHGS  LSQGEKNPVP  IYGVPDDLVV  VALESVYPEL  KGKRLRGRLE  GRVLKPYDDA180
ATIRDNGSSA  PVLAWLGDPM  DLQFLQIQGS  GRIQLEDGRQ  LRIGYGDQNG  HPYKPVGRWL240
VEQGLVPKEE  ISMKRIRDWA  EANPQRVSEL  LASNPSFVFF  SLRPDSDEGP  RGSLNVPLTD300
GYSVAIDRKV  IPLGSLMWLS  TTRPDDGSAV  VRPVAAQDTG  GAIVGEVRAD  LFWGTGDAAG360
ELAGHMKQPG  RLWLLWPKGA  PLPAS385

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help