CAZyme3D

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Entry ID

Information for CAZyme ID: ABH04538.1

Basic Information

GenBank IDABH04538.1
FamilyGT10
Sequence Length401
UniProt IDQ0V7Y9(100,100)Download
Average pLDDT?85.27
CAZy50 ID15535
CAZy50 RepNo, QCE08009.1
Structure Cluster-
EC Number(s)2.4.1.-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPMRYLNAMA  ALLMMFFTLL  ILSFTGILEF  PSASTSMEHS  IDPEPKLSDS  TSDPFSDVLV60
AYKKWDFEVG  CARFRENHKD  AILGNVSSGS  LQEFGCGKLK  MKHVKVLVKG  WTWIPDNLEN120
LYSCRCGMTC  LWTKSSVLAD  SPDALLFETT  TPPLQRRVGD  PLRVYMELEA  GRKRSGREDI180
FISYHAKDDV  QTTYAGSLFH  NNRNYHISPH  KNNDVLVYWS  SSRCLPHRDR  LAKSLLDLIP240
HHSFGKCLNN  VGGLDSALSM  YPECVAEHNA  EAKWYDHLHC  AMSHYKFVLA  IENTAVESYV300
TEKLFYALDS  GSVPIYFGAS  NVQDFVPPHS  VIDGSKFGSM  QELAAYVKRL  GDDPVAYSEY360
HAWRRCGLMG  NYGKTRAVSL  DTLPCRLCEE  ISRRGGKNAG  V401

Predicted 3D structure by AlphaFold2 with pLDDT = 85.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT10(98-396)

MPMRYLNAMA  ALLMMFFTLL  ILSFTGILEF  PSASTSMEHS  IDPEPKLSDS  TSDPFSDVLV60
AYKKWDFEVG  CARFRENHKD  AILGNVSSGS  LQEFGCGKLK  MKHVKVLVKG  WTWIPDNLEN120
LYSCRCGMTC  LWTKSSVLAD  SPDALLFETT  TPPLQRRVGD  PLRVYMELEA  GRKRSGREDI180
FISYHAKDDV  QTTYAGSLFH  NNRNYHISPH  KNNDVLVYWS  SSRCLPHRDR  LAKSLLDLIP240
HHSFGKCLNN  VGGLDSALSM  YPECVAEHNA  EAKWYDHLHC  AMSHYKFVLA  IENTAVESYV300
TEKLFYALDS  GSVPIYFGAS  NVQDFVPPHS  VIDGSKFGSM  QELAAYVKRL  GDDPVAYSEY360
HAWRRCGLMG  NYGKTRAVSL  DTLPCRLCEE  ISRRGGKNAG  V401

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help