CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ABF39584.1

Basic Information

GenBank IDABF39584.1
FamilyGH2
Sequence Length597
UniProt IDQ1IU66(100,100)Download
Average pLDDT?93.68
CAZy50 ID46783
CAZy50 RepNo, ADW68978.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID204669
KingdomBacteria
PhylumAcidobacteriota
ClassTerriglobia
OrderTerriglobales
FamilyCandidatus Korobacteraceae
GenusCandidatus Korobacter
SpeciesCandidatus Korobacter versatilis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPTTHRTQRR  SVLIVLVLFA  AAATAFAQTP  LIANIHARQI  TDLSGTWSTI  IDAYHVGERN60
RFYEDRHQTD  PSELIEYNFD  HSPTLKVPGD  WNSQRPELFL  YEGTLWYRRI  FSYHPAQGKR120
QFVYFGAANY  HATVYLNAQK  LGEHSGGYTP  FNFEVTGKLK  DGENLLVVEV  DDRRSKDAIP180
ALNTDWWNYG  GLTREVSLVE  VPSAFIENYF  IQLAKGSPNE  IAGWVQLNSA  AGGSEVTIEI240
PEAKLRQSAK  ADEHGRAAFR  FPAQLTPWSP  DNPKLYEVRI  SSGTDHLTDQ  IGFRTIEARG300
TKLYLNGKPI  FLRGISIHEE  APFRGGRAFA  SEDDKTLLGW  AKELGCNYVR  LAHYPHHESM360
VREAERMGIL  VWSEIPVYWD  IDWKNPDSLA  QARQQLHEEI  ARDQNRAAII  LWSIANETPI420
DPDRLEFLKA  LASDVRSLDN  TRLLTAALNR  TGREGKTRLI  DDPLGAVVDV  LAINEYIGWY480
ESRVEDADTT  EWKSSWEKPL  LFSEFGGGAP  YGRHGATNER  WTEEYQANLY  RHQLTMLRKI540
PALAGLSPWV  LMDFHSPVRL  LPGVQDMRNR  KGLVSDQGQR  KQAFYVLQEY  YREMGAH597

Predicted 3D structure by AlphaFold2 with pLDDT = 93.68 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH2(35-506)

MPTTHRTQRR  SVLIVLVLFA  AAATAFAQTP  LIANIHARQI  TDLSGTWSTI  IDAYHVGERN60
RFYEDRHQTD  PSELIEYNFD  HSPTLKVPGD  WNSQRPELFL  YEGTLWYRRI  FSYHPAQGKR120
QFVYFGAANY  HATVYLNAQK  LGEHSGGYTP  FNFEVTGKLK  DGENLLVVEV  DDRRSKDAIP180
ALNTDWWNYG  GLTREVSLVE  VPSAFIENYF  IQLAKGSPNE  IAGWVQLNSA  AGGSEVTIEI240
PEAKLRQSAK  ADEHGRAAFR  FPAQLTPWSP  DNPKLYEVRI  SSGTDHLTDQ  IGFRTIEARG300
TKLYLNGKPI  FLRGISIHEE  APFRGGRAFA  SEDDKTLLGW  AKELGCNYVR  LAHYPHHESM360
VREAERMGIL  VWSEIPVYWD  IDWKNPDSLA  QARQQLHEEI  ARDQNRAAII  LWSIANETPI420
DPDRLEFLKA  LASDVRSLDN  TRLLTAALNR  TGREGKTRLI  DDPLGAVVDV  LAINEYIGWY480
ESRVEDADTT  EWKSSWEKPL  LFSEFGGGAP  YGRHGATNER  WTEEYQANLY  RHQLTMLRKI540
PALAGLSPWV  LMDFHSPVRL  LPGVQDMRNR  KGLVSDQGQR  KQAFYVLQEY  YREMGAH597

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help