Information for CAZyme ID: ABE46347.1
Basic Information
GenBank ID | ABE46347.1 |
Family | GH5 |
Sequence Length | 814 |
UniProt ID | Q123E5(100,100)![]() |
Average pLDDT? | 90.22 |
CAZy50 ID | 24487 |
CAZy50 Rep | No, ABE45326.1 |
Structure Cluster | - |
EC Number(s) | - |
Substrates(s) | - |
Taxonomy
Tax ID | 296591 |
Kingdom | Bacteria |
Phylum | Pseudomonadota |
Class | Betaproteobacteria |
Order | Burkholderiales |
Family | Comamonadaceae |
Genus | Polaromonas |
Species | Polaromonas sp. JS666 |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
MQRREFSKAA VAVAALGGLG VASAGRPIKT VPGGTTTPPP TTTISGVPMG TNLSGMEWAK | 60 |
PGLRYGMSTA PNLNFTVPRA QDVAYLAANG YAKNRLPIQW ELLQPMLPDT YANAAAIAAI | 120 |
GNPGAFHAGY ESYITGVLDA HAAAGTKCII DNHNYCRYQD FKYQADGSVI GLTVPSDPLI | 180 |
RPYTTDNTQV RKRIFALAAG ATLTRAHFTD FWTRVAAKWG SHPGFGGYGL MNEPHDMPQP | 240 |
GGIVAWNEDA VKTAEDLTIW PAFAQAAINA IRTIDAANPI YVAGNLWDSA MFVGIKNPGF | 300 |
PLMGRNLIYE VHMYLDAYSN GAAFDYDTEV AKNYSAGFGV GSITESTGAD RIKIATDWAK | 360 |
ANGVKLALTE TGMPIDDLRW QAMFSRAVSY ARAAGCEIYS WMGGNHWPIR NYAINHVPGW | 420 |
HQNKTLEPSV SGPLKASAGI AKAVLFDDGP GYALAGTSIT ITVYARGNLA APVSIGVSSN | 480 |
NGGTFSKTVL IIPAGANGQD TFTYVPESNR IATLTYTSDG QLSGQVPPQR KIYSLNDPVA | 540 |
YAATSLPGAA MAILAKYSAA KWDLADGYTD YLQGAPAAAG EPVRAISDSG FGSSAGNAME | 600 |
MINWVNKANG GMGAMSVPVM RVTNGKKNSD HAVYNTWGFW CKKSLKMQGI QPNPRNRVPY | 660 |
NLEDSHFVIA AVSVPGQYNT GVLFQASQAE ARFTSELNFT NSCPGAKWVD ASGQTVQLAS | 720 |
STKLPVNVPS VVSFTCAPGS QKLRVNSALV AGASASFSPS AFNQMLIGWG YLSYYPRDGF | 780 |
RGNIYAVISG KGAPTAEELG VLEKYLASTA GVAI | 814 |
Predicted 3D structure by AlphaFold2 with pLDDT = 90.22 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH5_5(50-408)
MQRREFSKAA VAVAALGGLG VASAGRPIKT VPGGTTTPPP TTTISGVPMG TNLSGMEWAK | 60 |
PGLRYGMSTA PNLNFTVPRA QDVAYLAANG YAKNRLPIQW ELLQPMLPDT YANAAAIAAI | 120 |
GNPGAFHAGY ESYITGVLDA HAAAGTKCII DNHNYCRYQD FKYQADGSVI GLTVPSDPLI | 180 |
RPYTTDNTQV RKRIFALAAG ATLTRAHFTD FWTRVAAKWG SHPGFGGYGL MNEPHDMPQP | 240 |
GGIVAWNEDA VKTAEDLTIW PAFAQAAINA IRTIDAANPI YVAGNLWDSA MFVGIKNPGF | 300 |
PLMGRNLIYE VHMYLDAYSN GAAFDYDTEV AKNYSAGFGV GSITESTGAD RIKIATDWAK | 360 |
ANGVKLALTE TGMPIDDLRW QAMFSRAVSY ARAAGCEIYS WMGGNHWPIR NYAINHVPGW | 420 |
HQNKTLEPSV SGPLKASAGI AKAVLFDDGP GYALAGTSIT ITVYARGNLA APVSIGVSSN | 480 |
NGGTFSKTVL IIPAGANGQD TFTYVPESNR IATLTYTSDG QLSGQVPPQR KIYSLNDPVA | 540 |
YAATSLPGAA MAILAKYSAA KWDLADGYTD YLQGAPAAAG EPVRAISDSG FGSSAGNAME | 600 |
MINWVNKANG GMGAMSVPVM RVTNGKKNSD HAVYNTWGFW CKKSLKMQGI QPNPRNRVPY | 660 |
NLEDSHFVIA AVSVPGQYNT GVLFQASQAE ARFTSELNFT NSCPGAKWVD ASGQTVQLAS | 720 |
STKLPVNVPS VVSFTCAPGS QKLRVNSALV AGASASFSPS AFNQMLIGWG YLSYYPRDGF | 780 |
RGNIYAVISG KGAPTAEELG VLEKYLASTA GVAI | 814 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.