CAZyme3D

You are here: Home Cite us: 2025

Entry ID

Information for CAZyme ID: ABE46347.1

Basic Information

GenBank IDABE46347.1
FamilyGH5
Sequence Length814
UniProt IDQ123E5(100,100)Download
Average pLDDT?90.22
CAZy50 ID24487
CAZy50 RepNo, ABE45326.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID296591
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusPolaromonas
SpeciesPolaromonas sp. JS666

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRREFSKAA  VAVAALGGLG  VASAGRPIKT  VPGGTTTPPP  TTTISGVPMG  TNLSGMEWAK60
PGLRYGMSTA  PNLNFTVPRA  QDVAYLAANG  YAKNRLPIQW  ELLQPMLPDT  YANAAAIAAI120
GNPGAFHAGY  ESYITGVLDA  HAAAGTKCII  DNHNYCRYQD  FKYQADGSVI  GLTVPSDPLI180
RPYTTDNTQV  RKRIFALAAG  ATLTRAHFTD  FWTRVAAKWG  SHPGFGGYGL  MNEPHDMPQP240
GGIVAWNEDA  VKTAEDLTIW  PAFAQAAINA  IRTIDAANPI  YVAGNLWDSA  MFVGIKNPGF300
PLMGRNLIYE  VHMYLDAYSN  GAAFDYDTEV  AKNYSAGFGV  GSITESTGAD  RIKIATDWAK360
ANGVKLALTE  TGMPIDDLRW  QAMFSRAVSY  ARAAGCEIYS  WMGGNHWPIR  NYAINHVPGW420
HQNKTLEPSV  SGPLKASAGI  AKAVLFDDGP  GYALAGTSIT  ITVYARGNLA  APVSIGVSSN480
NGGTFSKTVL  IIPAGANGQD  TFTYVPESNR  IATLTYTSDG  QLSGQVPPQR  KIYSLNDPVA540
YAATSLPGAA  MAILAKYSAA  KWDLADGYTD  YLQGAPAAAG  EPVRAISDSG  FGSSAGNAME600
MINWVNKANG  GMGAMSVPVM  RVTNGKKNSD  HAVYNTWGFW  CKKSLKMQGI  QPNPRNRVPY660
NLEDSHFVIA  AVSVPGQYNT  GVLFQASQAE  ARFTSELNFT  NSCPGAKWVD  ASGQTVQLAS720
STKLPVNVPS  VVSFTCAPGS  QKLRVNSALV  AGASASFSPS  AFNQMLIGWG  YLSYYPRDGF780
RGNIYAVISG  KGAPTAEELG  VLEKYLASTA  GVAI814

Predicted 3D structure by AlphaFold2 with pLDDT = 90.22 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH5_5(50-408)

MQRREFSKAA  VAVAALGGLG  VASAGRPIKT  VPGGTTTPPP  TTTISGVPMG  TNLSGMEWAK60
PGLRYGMSTA  PNLNFTVPRA  QDVAYLAANG  YAKNRLPIQW  ELLQPMLPDT  YANAAAIAAI120
GNPGAFHAGY  ESYITGVLDA  HAAAGTKCII  DNHNYCRYQD  FKYQADGSVI  GLTVPSDPLI180
RPYTTDNTQV  RKRIFALAAG  ATLTRAHFTD  FWTRVAAKWG  SHPGFGGYGL  MNEPHDMPQP240
GGIVAWNEDA  VKTAEDLTIW  PAFAQAAINA  IRTIDAANPI  YVAGNLWDSA  MFVGIKNPGF300
PLMGRNLIYE  VHMYLDAYSN  GAAFDYDTEV  AKNYSAGFGV  GSITESTGAD  RIKIATDWAK360
ANGVKLALTE  TGMPIDDLRW  QAMFSRAVSY  ARAAGCEIYS  WMGGNHWPIR  NYAINHVPGW420
HQNKTLEPSV  SGPLKASAGI  AKAVLFDDGP  GYALAGTSIT  ITVYARGNLA  APVSIGVSSN480
NGGTFSKTVL  IIPAGANGQD  TFTYVPESNR  IATLTYTSDG  QLSGQVPPQR  KIYSLNDPVA540
YAATSLPGAA  MAILAKYSAA  KWDLADGYTD  YLQGAPAAAG  EPVRAISDSG  FGSSAGNAME600
MINWVNKANG  GMGAMSVPVM  RVTNGKKNSD  HAVYNTWGFW  CKKSLKMQGI  QPNPRNRVPY660
NLEDSHFVIA  AVSVPGQYNT  GVLFQASQAE  ARFTSELNFT  NSCPGAKWVD  ASGQTVQLAS720
STKLPVNVPS  VVSFTCAPGS  QKLRVNSALV  AGASASFSPS  AFNQMLIGWG  YLSYYPRDGF780
RGNIYAVISG  KGAPTAEELG  VLEKYLASTA  GVAI814

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help