Information for CAZyme ID: ABD83137.1
Basic Information
| GenBank ID | ABD83137.1 |
| Family | GH2 |
| Sequence Length | 961 |
| UniProt ID | Q21DU2(100,100) |
| Average pLDDT? | 92.31 |
| CAZy50 ID | 10240 |
| CAZy50 Rep | No, BCM93533.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 203122 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Gammaproteobacteria |
| Order | Cellvibrionales |
| Family | Cellvibrionaceae |
| Genus | Saccharophagus |
| Species | Saccharophagus degradans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MKISLYYHGR VVGRLVLLLA VLFGSSAAFA AEQEDGRERL SLNRGWYFHL GDVPMAPIKG | 60 |
| HSESYMNAKA GNAPGPAGRE FDDSEWRRLD LPHDWAVEGP FDPNENISQG YRPRGISWYR | 120 |
| RYLRVEESDR GRYFELQFDA IATHATVWVN GNVVKRNYSG YNASYIDITP YIRYGDAMNT | 180 |
| IAVKVDATQM EGWWYEGAGM YRHTWLVKAN PVHIVTDGLH ATPRLESETL EGGKWSIPVE | 240 |
| VTLNNSGENL QTVTVEVTVT APNGKQVAKQ SGNVTVPVLG EAVAKLPVTI QSPALWSHEQ | 300 |
| TNLYRVNAVV KHGKRVIDEI ALSTGFRTVR FDSQQGFFLN DKHVKLQGVC IHQDHAGVGV | 360 |
| AVPTSIWQYR LRRLKELGVN AIRFSHNAPA VEVLDLVDSM GFLVMDENRN FNPSPDYMQQ | 420 |
| LEWMVRRDRH HPGIILWSVF NEEPVQASEV GYQMVRRMVA AVKALDDTRP VTAAMNGGFF | 480 |
| SDLNVSHAVD VLGANYQVPD YDRFHAARPE MPFTSSEDTS AFMMRGEFTT DYDKNLIASY | 540 |
| DEDFAFWGNS HRDAWQAVAT RDYVAGAFVW TGFDYRGEPT PLAWPSVSSF FGIMDLNGFA | 600 |
| KTAYYIHRAQ WVKDEPQAYL APHWNWAGKE GQIIPVLVMA NVDKVQLLLN GKSLGEQVVD | 660 |
| PFQMNTFDVA YQPGKLEVIG YSSGKEVVRN SVETTGKAVA VQLVPDRKAL VGDGFDAMPI | 720 |
| TVQAVDAKGR VVPTDNSLIH FEISGAGQSI GHGNGNPNSH EDEKGATRHL FNGLAQLIVQ | 780 |
| SHYESSGNIT VKASSPGLKT AKVSIPVKKV AAVPYVASQT APNVHLSDWR TSPVASQRPD | 840 |
| PTQKVADNDM NSWGWGQPPF MSQAKGETAP ARYRLYRTNF TPRKNLARGD GELFIGDVVG | 900 |
| RVEVWLNDEL LYKKDNVRKQ NLRLPIPKGE GNRELTFLLE DEGQDNAVIG GPVIVQPKGK | 960 |
| K | 961 |
Predicted 3D structure by AlphaFold2 with pLDDT = 92.31 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH2(31-584)
| MKISLYYHGR VVGRLVLLLA VLFGSSAAFA AEQEDGRERL SLNRGWYFHL GDVPMAPIKG | 60 |
| HSESYMNAKA GNAPGPAGRE FDDSEWRRLD LPHDWAVEGP FDPNENISQG YRPRGISWYR | 120 |
| RYLRVEESDR GRYFELQFDA IATHATVWVN GNVVKRNYSG YNASYIDITP YIRYGDAMNT | 180 |
| IAVKVDATQM EGWWYEGAGM YRHTWLVKAN PVHIVTDGLH ATPRLESETL EGGKWSIPVE | 240 |
| VTLNNSGENL QTVTVEVTVT APNGKQVAKQ SGNVTVPVLG EAVAKLPVTI QSPALWSHEQ | 300 |
| TNLYRVNAVV KHGKRVIDEI ALSTGFRTVR FDSQQGFFLN DKHVKLQGVC IHQDHAGVGV | 360 |
| AVPTSIWQYR LRRLKELGVN AIRFSHNAPA VEVLDLVDSM GFLVMDENRN FNPSPDYMQQ | 420 |
| LEWMVRRDRH HPGIILWSVF NEEPVQASEV GYQMVRRMVA AVKALDDTRP VTAAMNGGFF | 480 |
| SDLNVSHAVD VLGANYQVPD YDRFHAARPE MPFTSSEDTS AFMMRGEFTT DYDKNLIASY | 540 |
| DEDFAFWGNS HRDAWQAVAT RDYVAGAFVW TGFDYRGEPT PLAWPSVSSF FGIMDLNGFA | 600 |
| KTAYYIHRAQ WVKDEPQAYL APHWNWAGKE GQIIPVLVMA NVDKVQLLLN GKSLGEQVVD | 660 |
| PFQMNTFDVA YQPGKLEVIG YSSGKEVVRN SVETTGKAVA VQLVPDRKAL VGDGFDAMPI | 720 |
| TVQAVDAKGR VVPTDNSLIH FEISGAGQSI GHGNGNPNSH EDEKGATRHL FNGLAQLIVQ | 780 |
| SHYESSGNIT VKASSPGLKT AKVSIPVKKV AAVPYVASQT APNVHLSDWR TSPVASQRPD | 840 |
| PTQKVADNDM NSWGWGQPPF MSQAKGETAP ARYRLYRTNF TPRKNLARGD GELFIGDVVG | 900 |
| RVEVWLNDEL LYKKDNVRKQ NLRLPIPKGE GNRELTFLLE DEGQDNAVIG GPVIVQPKGK | 960 |
| K | 961 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.