Information for CAZyme ID: ABD26035.1
Basic Information
| GenBank ID | ABD26035.1 |
| Family | CE4, GH18, GT2 |
| Sequence Length | 1101 |
| UniProt ID | Q2G7Y8(100,100) |
| Average pLDDT? | 87.60 |
| CAZy50 ID | 9192 |
| CAZy50 Rep | No, QCI94295.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 279238 |
| Kingdom | Bacteria |
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Sphingomonadales |
| Family | Sphingomonadaceae |
| Genus | Novosphingobium |
| Species | Novosphingobium aromaticivorans |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MTRPIFYDPT GRRSLLAKRS LAVVFLAVIL AALAFATTLV AVPRQRALSL PQPHFEAASL | 60 |
| HRGHGLSRLR SWLPRLHLQR SQEALAIGFY QPRSDASFQS LSRHGNQLDW VVPALLNVAG | 120 |
| PEHRLAVSND PRFDSFVAAG HHHYKVLPMV QNVGGDGWDG ANVARILENA TERHALERQL | 180 |
| ADYVARRGDA GLVLDFEDLP ATAMRPYVAF LRETNALLPA GAQLAVTAPA GEDDWPIAAL | 240 |
| GRAADKVILM AYDEHWQNGA AGPIASQTWF TNEVEKSARA LPADRLVIAL GSYGYDWHQG | 300 |
| GTDALSLSDA WLAAHDSHAP IIFDKASGNA GFAYEQDGVS HTVWMLDAAT DWNEMLAVQR | 360 |
| LGIGNLALWR LGTEDPGFWN DLAALRSGKA PDLSRLVSEG GNDVEGTGEI LRITATPVAG | 420 |
| SRTVAFGDQH LIRDERYGDL PTPFVVRRTG AANPKLLALT FDDGPDPKWT PKVLSTLEAA | 480 |
| HVPATFFVIG ENALVRPDLL RRMVADGDEI GNHTYTHPNL AGSSEAETRL EINATQRLVQ | 540 |
| AYTGRSMTLF RAPYFGDAEP TTADELQPAL RAQQAGYTIV GLHVDPNDWQ NPGTDEIVRQ | 600 |
| VVNQIHNATE QSSSNVILLH DGGGDRSQTV AALPRIVAVL RAEGYSFVTA SQLVGIPPQA | 660 |
| AMPRLSSSDL AAVRVDVAAF LALDGLVTLF SWLFFVAIAL GIARAVIMAG LAWWQSRSPR | 720 |
| AEPPAFEPTV SVIIPAWNEE RVIAASVERV LASDYPALQV IVADDGSKDA TSAVVARHFG | 780 |
| HDPRVTLLTL ANGGKAAALN RALRHATGEV VIALDADTQF EPLTIRRLAR WFADPRIGAV | 840 |
| AGDARVGNRV NLVTRWQAVE YITAQNLERR ALAGFDAMTV VPGAVGAWRR AALDSVGGYP | 900 |
| ENTLAEDQDL TIAIQRKGWR VTYDPRAVAW TEAPQTFRAL ARQRYRWAFG TLQCLWKHRK | 960 |
| VITSRKPAGL GLVGLPQAWL FQIAFAAISP LIDGALIASI ISTVVRVVQH GWAQTQGDLG | 1020 |
| RMAIYWSLFT AIDVICGWIA YRLDDKRPPY PAHLLVAQRI VYRQIMYWVV LRALASAIGG | 1080 |
| WIVGWGKLER TGTVSPAPER A | 1101 |
Predicted 3D structure by AlphaFold2 with pLDDT = 87.60 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : GH18(122-373)+CE4(452-564)+GT2(728-950)
| MTRPIFYDPT GRRSLLAKRS LAVVFLAVIL AALAFATTLV AVPRQRALSL PQPHFEAASL | 60 |
| HRGHGLSRLR SWLPRLHLQR SQEALAIGFY QPRSDASFQS LSRHGNQLDW VVPALLNVAG | 120 |
| PEHRLAVSND PRFDSFVAAG HHHYKVLPMV QNVGGDGWDG ANVARILENA TERHALERQL | 180 |
| ADYVARRGDA GLVLDFEDLP ATAMRPYVAF LRETNALLPA GAQLAVTAPA GEDDWPIAAL | 240 |
| GRAADKVILM AYDEHWQNGA AGPIASQTWF TNEVEKSARA LPADRLVIAL GSYGYDWHQG | 300 |
| GTDALSLSDA WLAAHDSHAP IIFDKASGNA GFAYEQDGVS HTVWMLDAAT DWNEMLAVQR | 360 |
| LGIGNLALWR LGTEDPGFWN DLAALRSGKA PDLSRLVSEG GNDVEGTGEI LRITATPVAG | 420 |
| SRTVAFGDQH LIRDERYGDL PTPFVVRRTG AANPKLLALT FDDGPDPKWT PKVLSTLEAA | 480 |
| HVPATFFVIG ENALVRPDLL RRMVADGDEI GNHTYTHPNL AGSSEAETRL EINATQRLVQ | 540 |
| AYTGRSMTLF RAPYFGDAEP TTADELQPAL RAQQAGYTIV GLHVDPNDWQ NPGTDEIVRQ | 600 |
| VVNQIHNATE QSSSNVILLH DGGGDRSQTV AALPRIVAVL RAEGYSFVTA SQLVGIPPQA | 660 |
| AMPRLSSSDL AAVRVDVAAF LALDGLVTLF SWLFFVAIAL GIARAVIMAG LAWWQSRSPR | 720 |
| AEPPAFEPTV SVIIPAWNEE RVIAASVERV LASDYPALQV IVADDGSKDA TSAVVARHFG | 780 |
| HDPRVTLLTL ANGGKAAALN RALRHATGEV VIALDADTQF EPLTIRRLAR WFADPRIGAV | 840 |
| AGDARVGNRV NLVTRWQAVE YITAQNLERR ALAGFDAMTV VPGAVGAWRR AALDSVGGYP | 900 |
| ENTLAEDQDL TIAIQRKGWR VTYDPRAVAW TEAPQTFRAL ARQRYRWAFG TLQCLWKHRK | 960 |
| VITSRKPAGL GLVGLPQAWL FQIAFAAISP LIDGALIASI ISTVVRVVQH GWAQTQGDLG | 1020 |
| RMAIYWSLFT AIDVICGWIA YRLDDKRPPY PAHLLVAQRI VYRQIMYWVV LRALASAIGG | 1080 |
| WIVGWGKLER TGTVSPAPER A | 1101 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.