CAZyme3D

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Entry ID

Information for CAZyme ID: ABC35458.1

Basic Information

GenBank IDABC35458.1
FamilyGH8
Sequence Length493
UniProt IDQ2T760(100,100)Download
Average pLDDT?78.93
CAZy50 ID1370
CAZy50 RepNo, AIS89543.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID271848
KingdomBacteria
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyBurkholderiaceae
GenusBurkholderia
SpeciesBurkholderia thailandensis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MARRAGRDAG  ERREMHEMHE  MHEMHEMHEM  RGAEDARERR  QARACAPARR  SSCGRRMRWR60
VIARAVAASV  AVAAFAAASA  GLACATERTR  GDGARRDAGL  RDAAAGVGET  SAPLSESMST120
SPAQAVPRAS  ADIAACSPSW  PRWERFKRDF  VSADGRVIDV  GSPDERTVSE  GQAYGLFFAL180
VANDRPAFDA  LLRWTEDNLA  QGDLAARLPA  WLWGRAADGA  WRVLDANAAS  DADLWLAYAL240
LEAGRLWGER  SYTARGALLA  KRVLDDETAT  LPGLGLVLLP  GPTGFRPARD  AWRLNPSYSP300
PQAIRGIGAH  LPDDARWARL  AASAGRVLID  SAPRGFAPDW  VLYRANDGFR  PDADTRAASA360
YNAIRVYLWA  GMLDARDPLA  IPLTARFAPF  ADYVAAHGAP  PETVDTMTGA  AGSRDGNAGF420
SAAAVPFLEA  RGERALADAQ  VARIARLERE  TPSGYYANVL  TLFGLGWRDG  RYRFAADGTL480
RVRWSEPCSM  PAR493

Predicted 3D structure by AlphaFold2 with pLDDT = 78.93 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH8(140-467)

MARRAGRDAG  ERREMHEMHE  MHEMHEMHEM  RGAEDARERR  QARACAPARR  SSCGRRMRWR60
VIARAVAASV  AVAAFAAASA  GLACATERTR  GDGARRDAGL  RDAAAGVGET  SAPLSESMST120
SPAQAVPRAS  ADIAACSPSW  PRWERFKRDF  VSADGRVIDV  GSPDERTVSE  GQAYGLFFAL180
VANDRPAFDA  LLRWTEDNLA  QGDLAARLPA  WLWGRAADGA  WRVLDANAAS  DADLWLAYAL240
LEAGRLWGER  SYTARGALLA  KRVLDDETAT  LPGLGLVLLP  GPTGFRPARD  AWRLNPSYSP300
PQAIRGIGAH  LPDDARWARL  AASAGRVLID  SAPRGFAPDW  VLYRANDGFR  PDADTRAASA360
YNAIRVYLWA  GMLDARDPLA  IPLTARFAPF  ADYVAAHGAP  PETVDTMTGA  AGSRDGNAGF420
SAAAVPFLEA  RGERALADAQ  VARIARLERE  TPSGYYANVL  TLFGLGWRDG  RYRFAADGTL480
RVRWSEPCSM  PAR493

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help