Information for CAZyme ID: ABA24213.1
Basic Information
| GenBank ID | ABA24213.1 |
| Family | CBM48, GH13_9 |
| Sequence Length | 764 |
| UniProt ID | Q3M473(100,100) |
| Average pLDDT? | 96.43 |
| CAZy50 ID | 24109 |
| CAZy50 Rep | No, APR88210.1 |
| Structure Cluster | - |
| EC Number(s) | - |
| Substrates(s) | - |
Taxonomy
| Tax ID | 240292 |
| Kingdom | Bacteria |
| Phylum | Cyanobacteriota |
| Class | Cyanophyceae |
| Order | Nostocales |
| Family | Nostocaceae |
| Genus | Trichormus |
| Species | Trichormus variabilis |
Protein Sequence: 90 < plddt <=100; 70 < plddt <= 90; 50 < plddt <= 70; 0 <= plddt <= 50; Download help
| MPMTTIAPEQ VNRIVWNQHH DPFEILGSHP IEQNGKNVWV VRAYLPNASA AWVVLPEQRQ | 60 |
| EYAMQTVHDP HFFECIIETS ELSNYQLKTK EGEHERVSYD PYAFRSPRLT DFDLHLFAEG | 120 |
| NHHRIYEKLG AHFTEVDGVT GVYFAVWAPN ARNVSVLGDF NLWDGRKHQM RKGATGVWEL | 180 |
| FIPEIGVGEH YKYEIKNFAG HIYEKSDPFG FQQEPRPKTA SIVSNLNSYN WSDENWLEQR | 240 |
| RHTDPLTQPI SVYEVHLGSW LHAASAEPAK LPNGETEPVV IASELNPGAR FLTYRELASR | 300 |
| LIPYVKELGY THIELLPIAE HPFDGSWGYQ VTGYYAPTSR FGTPEDFMYF VDQCHQNNIG | 360 |
| VIVDWVPGHF PKDGHGLAFF DGTHLYEHAD SRKGEHKEWG TLVFNYSRNE VRNFLVANAL | 420 |
| FWFDKYHIDG IRVDAVASML YLDYCRKEGE WLPNQYGGRE NLEAADFLRQ VNHLLFSYFP | 480 |
| GVLSIAEEST DWPMVSWPTY TGGLGFNLKW NMGWMHDMLD YFSMDPWFRQ FHQNNVTFSM | 540 |
| WYNHSENFML ALSHDEVVHG KSNIIGKMPG DKWQKLANVR CLFAYMFAHP GKKTMFMSME | 600 |
| FGQWSEWNVW ADLEWPLLQF EPHQQLKKFF TELNKLYRSE PALYTLDFAR EGFDWIDCSD | 660 |
| NRHSVVSFIR REKDTENFVV VVCNFTPQPH SHYRIGVPEK GFYTELFNSD ARQYGGSNMG | 720 |
| NLGGKWTDDW SMHSRPYSLD LCLPPLGVLI LKMDKEKTAK ASGS | 764 |
Predicted 3D structure by AlphaFold2 with pLDDT = 96.43 ; Download help
pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .
Residues were colored according to plddt ( blue-> high quality; red-> low quality ).
Carbohydrate binding residues Predicted by CAPSIF
Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).
Full Sequence: AA; CE; PL; GH; GT; CBM; Download structure help
dbCAN3 predicted domain(s) : CBM48(26-106)+CBM48(128-209)+GH13_9(303-603)
| MPMTTIAPEQ VNRIVWNQHH DPFEILGSHP IEQNGKNVWV VRAYLPNASA AWVVLPEQRQ | 60 |
| EYAMQTVHDP HFFECIIETS ELSNYQLKTK EGEHERVSYD PYAFRSPRLT DFDLHLFAEG | 120 |
| NHHRIYEKLG AHFTEVDGVT GVYFAVWAPN ARNVSVLGDF NLWDGRKHQM RKGATGVWEL | 180 |
| FIPEIGVGEH YKYEIKNFAG HIYEKSDPFG FQQEPRPKTA SIVSNLNSYN WSDENWLEQR | 240 |
| RHTDPLTQPI SVYEVHLGSW LHAASAEPAK LPNGETEPVV IASELNPGAR FLTYRELASR | 300 |
| LIPYVKELGY THIELLPIAE HPFDGSWGYQ VTGYYAPTSR FGTPEDFMYF VDQCHQNNIG | 360 |
| VIVDWVPGHF PKDGHGLAFF DGTHLYEHAD SRKGEHKEWG TLVFNYSRNE VRNFLVANAL | 420 |
| FWFDKYHIDG IRVDAVASML YLDYCRKEGE WLPNQYGGRE NLEAADFLRQ VNHLLFSYFP | 480 |
| GVLSIAEEST DWPMVSWPTY TGGLGFNLKW NMGWMHDMLD YFSMDPWFRQ FHQNNVTFSM | 540 |
| WYNHSENFML ALSHDEVVHG KSNIIGKMPG DKWQKLANVR CLFAYMFAHP GKKTMFMSME | 600 |
| FGQWSEWNVW ADLEWPLLQF EPHQQLKKFF TELNKLYRSE PALYTLDFAR EGFDWIDCSD | 660 |
| NRHSVVSFIR REKDTENFVV VVCNFTPQPH SHYRIGVPEK GFYTELFNSD ARQYGGSNMG | 720 |
| NLGGKWTDDW SMHSRPYSLD LCLPPLGVLI LKMDKEKTAK ASGS | 764 |
Predicted CAZyme domains from dbCAN; Download help
Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)
dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.
Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)
For more details, please see dbCAN3.