CAZyme3D

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Entry ID

Information for CAZyme ID: AAZ56201.1

Basic Information

GenBank IDAAZ56201.1
FamilyPL1_5
Sequence Length512
UniProt IDQ47MW8(100,100)Download
Average pLDDT?89.45
CAZy50 ID5857
CAZy50 RepNo, QHQ40380.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID269800
KingdomBacteria
PhylumActinomycetota
ClassActinomycetes
OrderStreptosporangiales
FamilyNocardiopsaceae
GenusThermobifida
SpeciesThermobifida fusca

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MGRSITRRLA  STLATAAVVT  AGLTLPVSPA  SAQTGSATGY  AALNGGTTGG  AGGQVVRATT60
GTEIHQALCQ  RPSTSTPIII  QVEGTINHGN  TSKVSGPGCD  TASDKIELKK  ISNVTIVGVG120
NGALFDQIGI  HIRESRNIII  QNVHIRNVKK  SGSPTSNGGD  AIGMEKDVRN  VWVDHVTLEA180
SGGESEGYDG  LFDLKDNTQY  VTLSYSILRN  SGRGGLIGSS  ESDLSNGYIT  FHHNLYENID240
SRTPLLRGGV  AHMYNNHYVR  LNNSGINSRA  GARAKVENNY  FQNSKDVLGT  FYTNERGYWE300
VRGNIFDNVT  WSSQGNENYP  AGPNPQSTTS  VSIPYSYRLD  DAGCVPQIVS  QTAGANKGNR360
VSDGNCRAED  PGNPDPGNPD  PGNPDPGTPP  GGTNLSIGAD  ADGSSKASGT  SYKNVIDGDM420
STYWSPSGST  GRISVKWGSN  VTVSAIHIRE  AAGAVGNIGS  WRVVNNDTGA  VLATGTGAGV480
ITFTPTTLRK  INFEILSSNG  TPRVAEFETY  AG512

Predicted 3D structure by AlphaFold2 with pLDDT = 89.45 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL1_5(102-283)+CBM32(403-507)

MGRSITRRLA  STLATAAVVT  AGLTLPVSPA  SAQTGSATGY  AALNGGTTGG  AGGQVVRATT60
GTEIHQALCQ  RPSTSTPIII  QVEGTINHGN  TSKVSGPGCD  TASDKIELKK  ISNVTIVGVG120
NGALFDQIGI  HIRESRNIII  QNVHIRNVKK  SGSPTSNGGD  AIGMEKDVRN  VWVDHVTLEA180
SGGESEGYDG  LFDLKDNTQY  VTLSYSILRN  SGRGGLIGSS  ESDLSNGYIT  FHHNLYENID240
SRTPLLRGGV  AHMYNNHYVR  LNNSGINSRA  GARAKVENNY  FQNSKDVLGT  FYTNERGYWE300
VRGNIFDNVT  WSSQGNENYP  AGPNPQSTTS  VSIPYSYRLD  DAGCVPQIVS  QTAGANKGNR360
VSDGNCRAED  PGNPDPGNPD  PGNPDPGTPP  GGTNLSIGAD  ADGSSKASGT  SYKNVIDGDM420
STYWSPSGST  GRISVKWGSN  VTVSAIHIRE  AAGAVGNIGS  WRVVNNDTGA  VLATGTGAGV480
ITFTPTTLRK  INFEILSSNG  TPRVAEFETY  AG512

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help