CAZyme3D

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Entry ID

Information for CAZyme ID: AAW31751.2

Basic Information

GenBank IDAAW31751.2
FamilyCBM0, CBM40, GH33
Sequence Length807
UniProt IDQ5IB64(100,100)Download
Average pLDDT?93.63
CAZy50 ID26577
CAZy50 RepNo, QHA21694.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID666
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderVibrionales
FamilyVibrionaceae
GenusVibrio
SpeciesVibrio cholerae

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSIKMTSQRR  RASIHKETDS  NIKGVDMRFK  NVKKTALMLA  MFGMATSSNA  ALFDYNATGD60
TEFDSPAKQG  WMQDNTNNGS  GVLTNADGMP  AWLVQGNGGR  AQWTYSLSTN  QHAQASSFGW120
RMTTEMKVLS  GGMITNYYAN  GTQRVLPIIS  LDSSGNLVVE  FEGQTGRTIL  ATGTAATEYH180
KFELVFLPGS  NPSASFYFDG  KLIRDNIQPT  ASKQNMIVWG  NGSSNTDGVA  AYRDIKFEIQ240
GDVIFRGPDR  IPSIVASSVT  PGVVTAFAEK  RVGGGDPGAL  SNTNDIITRT  SRDGGITWDT300
ELNLTEQINV  SDEFDFSDPR  PIYDPSTNTV  LVSYARWPTD  AAQNGDRIKP  WMPNGIFYSV360
YDVASGNWRA  PIDVTDQVKE  RSFQIAGWGG  SELYRRNTNL  NSQQDWQSNA  KIRIVDGAAN420
QIQVADGGRK  YVFTLSIDES  GSLVANLNGV  SDPIILQSER  AKVHSFHDYE  LQYSALNRST480
TLFVDGQAIT  TWTGEVSQEN  NIQFGNADAQ  IDGRLHVQNI  ALTQQGQNLV  EFDAFYLAQQ540
TPEVEKDLEK  LGWTKIKTGN  TMSLYGNASV  NPGPGHGITL  TRQQNISGSQ  NGRLIYPAIV600
LDRFFLNVMS  IYSDDGGSNW  QTGSTLPIPF  RWKSSSILET  LEPSEADMVE  LQNGDLLLTA660
RLDFNQIVNG  VNYSPRQQFL  SKDGGITWSL  LEANNANVFS  NISTGTVDAS  ITRFEQSDGS720
HFLLFTNPQG  NPAGTNGRQN  LGLWFSFDEG  VTWKGPIQLV  NGASAYSDIY  QLDSENAIVI780
VETDNSNMRI  LRMPITLLKQ  KLTLSQN807

Predicted 3D structure by AlphaFold2 with pLDDT = 93.63 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH33(244-794)

MSIKMTSQRR  RASIHKETDS  NIKGVDMRFK  NVKKTALMLA  MFGMATSSNA  ALFDYNATGD60
TEFDSPAKQG  WMQDNTNNGS  GVLTNADGMP  AWLVQGNGGR  AQWTYSLSTN  QHAQASSFGW120
RMTTEMKVLS  GGMITNYYAN  GTQRVLPIIS  LDSSGNLVVE  FEGQTGRTIL  ATGTAATEYH180
KFELVFLPGS  NPSASFYFDG  KLIRDNIQPT  ASKQNMIVWG  NGSSNTDGVA  AYRDIKFEIQ240
GDVIFRGPDR  IPSIVASSVT  PGVVTAFAEK  RVGGGDPGAL  SNTNDIITRT  SRDGGITWDT300
ELNLTEQINV  SDEFDFSDPR  PIYDPSTNTV  LVSYARWPTD  AAQNGDRIKP  WMPNGIFYSV360
YDVASGNWRA  PIDVTDQVKE  RSFQIAGWGG  SELYRRNTNL  NSQQDWQSNA  KIRIVDGAAN420
QIQVADGGRK  YVFTLSIDES  GSLVANLNGV  SDPIILQSER  AKVHSFHDYE  LQYSALNRST480
TLFVDGQAIT  TWTGEVSQEN  NIQFGNADAQ  IDGRLHVQNI  ALTQQGQNLV  EFDAFYLAQQ540
TPEVEKDLEK  LGWTKIKTGN  TMSLYGNASV  NPGPGHGITL  TRQQNISGSQ  NGRLIYPAIV600
LDRFFLNVMS  IYSDDGGSNW  QTGSTLPIPF  RWKSSSILET  LEPSEADMVE  LQNGDLLLTA660
RLDFNQIVNG  VNYSPRQQFL  SKDGGITWSL  LEANNANVFS  NISTGTVDAS  ITRFEQSDGS720
HFLLFTNPQG  NPAGTNGRQN  LGLWFSFDEG  VTWKGPIQLV  NGASAYSDIY  QLDSENAIVI780
VETDNSNMRI  LRMPITLLKQ  KLTLSQN807

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help