CAZyme3D

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Entry ID

Information for CAZyme ID: AAT40044.1

Basic Information

GenBank IDAAT40044.1
FamilyCBM18, GH19
Sequence Length280
UniProt IDQ6JBK8(100,100)Download
Average pLDDT?88.39
CAZy50 ID66102
CAZy50 RepNo, WFQ81615.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID76912
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusZea
SpeciesZea mays

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MANAPRILAL  GLLALLCAAA  GPAAAQNCGC  QPNFCCSKFG  YCGTTDAYCG  DGCQSGPCRS60
GGGGGGGGGG  GGGGSGGANV  ANVVTDAFFN  GIKNQAGSGC  EGKNFYTRSA  FLSAVNAYPG120
FAHGGTEVEG  KREIAAFFAH  VTHETGHFCY  ISEINKNNAY  CDASNRQWPC  AAGQKYYGRG180
PLQISWNYNY  GPAGRDIGFN  GLADPNRVAQ  DAVIAFKTAL  WFWMNNVHRL  MPQGFGATIR240
AINGALECNG  NNPAQMNARV  GYYKQYCQQL  RVDPGPNLTC  280

Predicted 3D structure by AlphaFold2 with pLDDT = 88.39 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(24-58)+GH19(80-280)

MANAPRILAL  GLLALLCAAA  GPAAAQNCGC  QPNFCCSKFG  YCGTTDAYCG  DGCQSGPCRS60
GGGGGGGGGG  GGGGSGGANV  ANVVTDAFFN  GIKNQAGSGC  EGKNFYTRSA  FLSAVNAYPG120
FAHGGTEVEG  KREIAAFFAH  VTHETGHFCY  ISEINKNNAY  CDASNRQWPC  AAGQKYYGRG180
PLQISWNYNY  GPAGRDIGFN  GLADPNRVAQ  DAVIAFKTAL  WFWMNNVHRL  MPQGFGATIR240
AINGALECNG  NNPAQMNARV  GYYKQYCQQL  RVDPGPNLTC  280

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help