CAZyme3D

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Entry ID

Information for CAZyme ID: AAT40010.1

Basic Information

GenBank IDAAT40010.1
FamilyCBM18, GH19
Sequence Length278
UniProt IDQ6JBP2(100,100)Download
Average pLDDT?88.38
CAZy50 ID66102
CAZy50 RepNo, WFQ81615.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID4576
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderPoales
FamilyPoaceae
GenusZea
SpeciesZea diploperennis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MAKAGAPRVS  AAQLVTLGLA  LLCAVAGPAA  AQNCGCQPNV  CCSKFGYCGT  TDEYCGDGCQ60
SGPCRSGGGS  SGGGGANVAS  VVTGSFFNGI  KNQAGSGCEG  KNFYTRSAFL  SAVKAYPGFA120
HGGSQVQGKR  EIAAFFAHAT  HETGHFCYIS  EINKSNAYCD  PSKRQWPCAA  GQKYYGRGPL180
QISWNYNYGP  AGRAIGFDGL  GDPGRVARDA  VVAFKAALWF  WMNSVHGVVP  QGFGATTRAI240
NGALECGGNN  PAQMNARVGY  YRQYCRQLGV  DPGPNLTC278

Predicted 3D structure by AlphaFold2 with pLDDT = 88.38 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(30-64)+GH19(78-278)

MAKAGAPRVS  AAQLVTLGLA  LLCAVAGPAA  AQNCGCQPNV  CCSKFGYCGT  TDEYCGDGCQ60
SGPCRSGGGS  SGGGGANVAS  VVTGSFFNGI  KNQAGSGCEG  KNFYTRSAFL  SAVKAYPGFA120
HGGSQVQGKR  EIAAFFAHAT  HETGHFCYIS  EINKSNAYCD  PSKRQWPCAA  GQKYYGRGPL180
QISWNYNYGP  AGRAIGFDGL  GDPGRVARDA  VVAFKAALWF  WMNSVHGVVP  QGFGATTRAI240
NGALECGGNN  PAQMNARVGY  YRQYCRQLGV  DPGPNLTC278

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help