CAZyme3D

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Entry ID

Information for CAZyme ID: AAS96717.1

Basic Information

GenBank IDAAS96717.1
FamilyGT5
Sequence Length489
UniProt IDQ729V4(100,100)Download
Average pLDDT?94.60
CAZy50 ID68133
CAZy50 RepNo, BDV00017.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID882
KingdomBacteria
PhylumThermodesulfobacteriota
ClassDesulfovibrionia
OrderDesulfovibrionales
FamilyDesulfovibrionaceae
GenusNitratidesulfovibrio
SpeciesNitratidesulfovibrio vulgaris

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MQRQVVFATS  EMYPFSKSGG  LGDVLGALPL  ALHRMGVPTA  VVTPFYGRLR  TADYPIRLTV60
SDCHVGYPWA  PITCDVFEAD  YHGMPVYFIH  RGEYFDRRYY  YNDHKGDYFD  NCERFVFFCR120
ALLALMRRLG  QPPAVLHAHD  WQTALVPAFL  YFLRQTDPFW  QDTRSVLTIH  NLAFQGRFAS180
RLFETSGLPP  QAWSVDGAEF  WGDFNLLKAG  IAYADKVTTV  SPSYAREILG  PAYGSGLDGI240
LRKRAHALHG  ILNGADYDIW  SPGNDRFLPC  RYTPTDLAGK  AQCKRALIEE  LGLDPHLARR300
PILGFIGRLR  GQKGIDLLLD  ILPRLMESDV  GVIILGEGNL  THEARALELM  EAYRGRVCTI360
VSYTEDLAHR  IQAGSDIFLM  PSRYEPCGLT  QMYALRYGTP  PVATAVGGLR  DTIVPWPSPE420
STGFTFGRCE  SAAFLRAILD  AVHLWTTAPG  DWQGMVRRAM  AQAFTWERAG  RAYLDLYAQL480
GVSPGEEGA489

Predicted 3D structure by AlphaFold2 with pLDDT = 94.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT5(4-479)

MQRQVVFATS  EMYPFSKSGG  LGDVLGALPL  ALHRMGVPTA  VVTPFYGRLR  TADYPIRLTV60
SDCHVGYPWA  PITCDVFEAD  YHGMPVYFIH  RGEYFDRRYY  YNDHKGDYFD  NCERFVFFCR120
ALLALMRRLG  QPPAVLHAHD  WQTALVPAFL  YFLRQTDPFW  QDTRSVLTIH  NLAFQGRFAS180
RLFETSGLPP  QAWSVDGAEF  WGDFNLLKAG  IAYADKVTTV  SPSYAREILG  PAYGSGLDGI240
LRKRAHALHG  ILNGADYDIW  SPGNDRFLPC  RYTPTDLAGK  AQCKRALIEE  LGLDPHLARR300
PILGFIGRLR  GQKGIDLLLD  ILPRLMESDV  GVIILGEGNL  THEARALELM  EAYRGRVCTI360
VSYTEDLAHR  IQAGSDIFLM  PSRYEPCGLT  QMYALRYGTP  PVATAVGGLR  DTIVPWPSPE420
STGFTFGRCE  SAAFLRAILD  AVHLWTTAPG  DWQGMVRRAM  AQAFTWERAG  RAYLDLYAQL480
GVSPGEEGA489

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help