CAZyme3D

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Entry ID

Information for CAZyme ID: AAP70366.1

Basic Information

GenBank IDAAP70366.1
FamilyGH50
Sequence Length404
UniProt IDQ6XE78(100,100)Download
Average pLDDT?97.58
CAZy50 ID14786
CAZy50 RepNo, ADM25828.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MFEWLPKHSD  PLGNHYDYNR  DAHSGPLLKG  EVFSFYSANL  ERKYGESEPE  SYLRQWEKVT60
VDRMLSWGFT  SLGNWTDPKF  YNNKRIPYFA  NGWIIGNFKT  VSSGNDFWGG  LPDPFDPVFK120
ERALVTAKAI  AAEVNNSPWC  VGVFIDNEKS  WGRSETKESE  YGIVLNTLTR  DGADSPTKAK180
FTELMKAKYP  DIAALNTAWG  TSVDSWAEFQ  KGVKTGINND  AQVQDFSLLF  TSYAEEYFKI240
VEAALRQYLP  NHMYMGVRFA  DWGMPMDVVK  ASTKYADVVS  YNFYKEGLTA  NKWKFLAELD300
KPSIIGEFHV  GTTASGLFHP  GLVHAANQED  RAKMYKEYMQ  TVIDNPYFIG  AHWFQYMDSP360
VTGRSYDGEN  YNVGFVSVTD  TPYAPMVKAA  KELHREMYTR  RAKK404

Predicted 3D structure by AlphaFold2 with pLDDT = 97.58 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(1-399)

MFEWLPKHSD  PLGNHYDYNR  DAHSGPLLKG  EVFSFYSANL  ERKYGESEPE  SYLRQWEKVT60
VDRMLSWGFT  SLGNWTDPKF  YNNKRIPYFA  NGWIIGNFKT  VSSGNDFWGG  LPDPFDPVFK120
ERALVTAKAI  AAEVNNSPWC  VGVFIDNEKS  WGRSETKESE  YGIVLNTLTR  DGADSPTKAK180
FTELMKAKYP  DIAALNTAWG  TSVDSWAEFQ  KGVKTGINND  AQVQDFSLLF  TSYAEEYFKI240
VEAALRQYLP  NHMYMGVRFA  DWGMPMDVVK  ASTKYADVVS  YNFYKEGLTA  NKWKFLAELD300
KPSIIGEFHV  GTTASGLFHP  GLVHAANQED  RAKMYKEYMQ  TVIDNPYFIG  AHWFQYMDSP360
VTGRSYDGEN  YNVGFVSVTD  TPYAPMVKAA  KELHREMYTR  RAKK404

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help