CAZyme3D

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Entry ID

Information for CAZyme ID: AAP49317.1

Basic Information

GenBank IDAAP49317.1
FamilyGH50
Sequence Length772
UniProt IDQ6XR79(100,100)Download
Average pLDDT?93.41
CAZy50 ID27214
CAZy50 RepNo, ARD22208.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID77133
KingdomBacteria
Phylum
Class
Order
Family
Genus
Speciesuncultured bacterium

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKSQYLNHI  LLCAISLFLI  AACSEQKHNN  NKNERANLNE  IKESILLDFE  NENDIKVVEL60
KNSISQIIVN  EGNHSLEINF  FSLNNHDSSF  EIKPSNAWNF  SDYETVALAL  DIENPTTSSA120
HIYVYTYDKN  GAFQLSNVAV  PAESTHSYLI  ELKVPSLLLN  TGIRNDPPSW  PHNYISTIWR180
GGTKTLDTSA  ITSVRLLISG  VLENKQLIID  NLRLVEPDNF  DSAYLVGLVD  EFGQNAKQDF240
VGKVHSTEQL  RSLSRQEQKN  LTDQQFPARS  TFNGWINGPK  LTATGYFRTE  KYDGKWTLVD300
PEGYLFFSNG  LANIRMANTS  TITGYDFDAA  LIKQRDADDY  TPEDSIGLNT  APKSAWSSRH360
ISSQLRADMF  TWLPSYNEAA  GANYGYRRSV  HSGSLKHGET  FSFYRANLAR  KYATQDEETL420
MQYWRDATIK  RMHNWGFTSF  GNWVDASFYQ  MNRLPYFANG  WIIGDFKTVN  SGNDYWGAMP480
DPFDPVFTQR  TDKVIAQIAN  EVKNNPWCVG  VFIDNEKSWG  SMGTPSLQYG  IVINGLKKKA540
NDSPLKQEFI  RHLKNKYQNI  ENLNTAWDLK  NTSWAQLSQP  VELVLFNEKM  LGDFSELLYL600
YADAYFSRVN  QAFRKHMPNH  LYMGPRFAHW  AMTPEVLKAA  AKYTDVMSYN  YYREGIDQPY660
WDFLAELDKP  SIIGEFHNGA  IDSGLLNPGL  IHAESQFDRG  EKYKSYLNSV  IDNPYFVGAH720
WFQYIDSPLT  GRAYDGENYN  VGFVSVADIP  YPPLVKAAQE  VNRNLYQKRF  GK772

Predicted 3D structure by AlphaFold2 with pLDDT = 93.41 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH50(93-766)

MKKSQYLNHI  LLCAISLFLI  AACSEQKHNN  NKNERANLNE  IKESILLDFE  NENDIKVVEL60
KNSISQIIVN  EGNHSLEINF  FSLNNHDSSF  EIKPSNAWNF  SDYETVALAL  DIENPTTSSA120
HIYVYTYDKN  GAFQLSNVAV  PAESTHSYLI  ELKVPSLLLN  TGIRNDPPSW  PHNYISTIWR180
GGTKTLDTSA  ITSVRLLISG  VLENKQLIID  NLRLVEPDNF  DSAYLVGLVD  EFGQNAKQDF240
VGKVHSTEQL  RSLSRQEQKN  LTDQQFPARS  TFNGWINGPK  LTATGYFRTE  KYDGKWTLVD300
PEGYLFFSNG  LANIRMANTS  TITGYDFDAA  LIKQRDADDY  TPEDSIGLNT  APKSAWSSRH360
ISSQLRADMF  TWLPSYNEAA  GANYGYRRSV  HSGSLKHGET  FSFYRANLAR  KYATQDEETL420
MQYWRDATIK  RMHNWGFTSF  GNWVDASFYQ  MNRLPYFANG  WIIGDFKTVN  SGNDYWGAMP480
DPFDPVFTQR  TDKVIAQIAN  EVKNNPWCVG  VFIDNEKSWG  SMGTPSLQYG  IVINGLKKKA540
NDSPLKQEFI  RHLKNKYQNI  ENLNTAWDLK  NTSWAQLSQP  VELVLFNEKM  LGDFSELLYL600
YADAYFSRVN  QAFRKHMPNH  LYMGPRFAHW  AMTPEVLKAA  AKYTDVMSYN  YYREGIDQPY660
WDFLAELDKP  SIIGEFHNGA  IDSGLLNPGL  IHAESQFDRG  EKYKSYLNSV  IDNPYFVGAH720
WFQYIDSPLT  GRAYDGENYN  VGFVSVADIP  YPPLVKAAQE  VNRNLYQKRF  GK772

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help