CAZyme3D

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Entry ID

Information for CAZyme ID: AAP17752.1

Basic Information

GenBank IDAAP17752.1
FamilyGH32
Sequence Length477
UniProt IDA0A3R0LTX6(100,100)Download
Average pLDDT?96.75
CAZy50 ID64075
CAZy50 RepNo, WEI57568.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID198215
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella flexneri

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MTQSRLHAAQ  NALAKLHEHR  GNTFYPHFHL  APPAGWMNDP  NGLIWFNDRY  HAFYQHHPMS60
EHWGPMHWGH  ATSDDMIHWQ  HEPIALALGD  DNDKDGCFSG  SAVDDNGVLS  LIYTGHVWLD120
GAGNDDAIRE  VQCLATSRDG  IHFEKQGVIL  TPPEGIMHFR  DPKVWREADT  WWMVVGAKDP180
GNTGQILLYR  GSSLREWAFD  RVLAHADAGE  SYMWECPDFF  SLGDQHYLMF  SPQGMNAEGY240
SYRNRFQSGV  IPGMWSPGRL  FAQSGHFTEL  DNGHDFYAPQ  SFLAKDGRRI  VIGWMDMWES300
PMPSKREGWA  GCMTLARELS  ESNGKLLQRP  VHEAESLRQQ  HQSVSPRRIS  NKYVLQENAQ360
AVEIQLQWAL  KNSDAEHYGL  QLGTGMRLYI  DNQSERLILW  RYYPHENLDG  YRSIPLPQRD420
TLALRIFIDT  SSVEVFINDG  EAVMSSRIYP  QPEERELSLY  ASHGVAVLQH  GALWLLG477

Predicted 3D structure by AlphaFold2 with pLDDT = 96.75 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH32(29-330)

MTQSRLHAAQ  NALAKLHEHR  GNTFYPHFHL  APPAGWMNDP  NGLIWFNDRY  HAFYQHHPMS60
EHWGPMHWGH  ATSDDMIHWQ  HEPIALALGD  DNDKDGCFSG  SAVDDNGVLS  LIYTGHVWLD120
GAGNDDAIRE  VQCLATSRDG  IHFEKQGVIL  TPPEGIMHFR  DPKVWREADT  WWMVVGAKDP180
GNTGQILLYR  GSSLREWAFD  RVLAHADAGE  SYMWECPDFF  SLGDQHYLMF  SPQGMNAEGY240
SYRNRFQSGV  IPGMWSPGRL  FAQSGHFTEL  DNGHDFYAPQ  SFLAKDGRRI  VIGWMDMWES300
PMPSKREGWA  GCMTLARELS  ESNGKLLQRP  VHEAESLRQQ  HQSVSPRRIS  NKYVLQENAQ360
AVEIQLQWAL  KNSDAEHYGL  QLGTGMRLYI  DNQSERLILW  RYYPHENLDG  YRSIPLPQRD420
TLALRIFIDT  SSVEVFINDG  EAVMSSRIYP  QPEERELSLY  ASHGVAVLQH  GALWLLG477

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help