CAZyme3D

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Entry ID

Information for CAZyme ID: AAO78634.1

Basic Information

GenBank IDAAO78634.1
FamilyGH125
Sequence Length487
UniProt IDQ8A1Y0(100,100)Download
Average pLDDT?92.90
CAZy50 ID8018
CAZy50 RepNo, BDF65492.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID226186
KingdomBacteria
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyBacteroidaceae
GenusBacteroides
SpeciesBacteroides thetaiotaomicron

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MKKQVKYISA  GMLAGMLLCG  GQMQAANTMS  GMHVCVTDAI  QKDNRPEVSK  RLFRSNAVEK60
EIIRVQKLLK  NEKLAWMFAN  CFPNTIDTTV  HFRKGADGKP  DTFVYTGDIH  AMWLRDSGAQ120
VWPYVQLANS  DPELKEMLAG  VILRQFKCIN  IDPYANAFND  GAVEDNHWMS  DLTDMKPELH180
ERKWEIDSLC  YPLRLAYHYW  KTTGDASIFS  EEWIQAITNV  LKTFKEQQRK  DGVGPYKFQR240
KTERALDTLN  NDGLGAPVKP  VGLIVSCFRP  SDDATTLQYL  VPSNFFAVSS  LRKAAEILDK300
VNKKTALAKE  CKDLAKEVET  ALKKYAVYNH  PKYGKIYAFE  VDGFGNHFLM  DDANVPSLLA360
MPYLGDVDVN  DPIYQNTRKF  VWSEDNPYFF  KGKAGEGIGG  PHIGYDMVWP  MSIMMKAFTS420
KDDAEIKTCI  KMLMDTDAGT  GFMHESFHKD  DPKNFTRAWF  AWQNTLFGEL  ILKLVNEGKV480
DLLNSIN487

Predicted 3D structure by AlphaFold2 with pLDDT = 92.90 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH125(72-472)

MKKQVKYISA  GMLAGMLLCG  GQMQAANTMS  GMHVCVTDAI  QKDNRPEVSK  RLFRSNAVEK60
EIIRVQKLLK  NEKLAWMFAN  CFPNTIDTTV  HFRKGADGKP  DTFVYTGDIH  AMWLRDSGAQ120
VWPYVQLANS  DPELKEMLAG  VILRQFKCIN  IDPYANAFND  GAVEDNHWMS  DLTDMKPELH180
ERKWEIDSLC  YPLRLAYHYW  KTTGDASIFS  EEWIQAITNV  LKTFKEQQRK  DGVGPYKFQR240
KTERALDTLN  NDGLGAPVKP  VGLIVSCFRP  SDDATTLQYL  VPSNFFAVSS  LRKAAEILDK300
VNKKTALAKE  CKDLAKEVET  ALKKYAVYNH  PKYGKIYAFE  VDGFGNHFLM  DDANVPSLLA360
MPYLGDVDVN  DPIYQNTRKF  VWSEDNPYFF  KGKAGEGIGG  PHIGYDMVWP  MSIMMKAFTS420
KDDAEIKTCI  KMLMDTDAGT  GFMHESFHKD  DPKNFTRAWF  AWQNTLFGEL  ILKLVNEGKV480
DLLNSIN487

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help