CAZyme3D

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Entry ID

Information for CAZyme ID: AAM31642.1

Basic Information

GenBank IDAAM31642.1
FamilyGT4
Sequence Length375
UniProt IDQ8PVL7(100,100)Download
Average pLDDT?88.82
CAZy50 ID103917
CAZy50 RepNo, BBL65448.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID192952
KingdomArchaea
PhylumEuryarchaeota
ClassMethanomicrobia
OrderMethanosarcinales
FamilyMethanosarcinaceae
GenusMethanosarcina
SpeciesMethanosarcina mazei

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MHSLAKTLIQ  EGHEVHIITR  SYPGIPQYSM  RDRIKIIRVG  SDPFPGQKRF  MMPGAYKELY60
NLLRSENYDM  IHSHGLDSPL  SMAALLMSRK  IGLPSVVTNH  SLVGHTALSP  ALYLAGKLLV120
RNADAVIAVS  SAVEKDSKLM  TKKPVYRIFN  GIECEENSCK  ATLPINREEK  IVIASVARMT180
RKKGVHHLVK  LAPALLKKHE  NLMFVMIGDG  PLTKKLEKRV  KKCGLSDNFY  FTGEITRNKV240
LDYLEQADIF  AHPSGDEGFG  ISILEAILKK  VPVVAMNHSG  VSDIIEHGVD  GFLAEDLTEF300
SSCLETLIEN  PELRTEFARK  AAEGLPKYDW  DRIYEQTCRV  YTGIINGKHH  NRSLEQESLS360
ESDYKKLLKK  TDQRE375

Predicted 3D structure by AlphaFold2 with pLDDT = 88.82 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT4(167-316)

MHSLAKTLIQ  EGHEVHIITR  SYPGIPQYSM  RDRIKIIRVG  SDPFPGQKRF  MMPGAYKELY60
NLLRSENYDM  IHSHGLDSPL  SMAALLMSRK  IGLPSVVTNH  SLVGHTALSP  ALYLAGKLLV120
RNADAVIAVS  SAVEKDSKLM  TKKPVYRIFN  GIECEENSCK  ATLPINREEK  IVIASVARMT180
RKKGVHHLVK  LAPALLKKHE  NLMFVMIGDG  PLTKKLEKRV  KKCGLSDNFY  FTGEITRNKV240
LDYLEQADIF  AHPSGDEGFG  ISILEAILKK  VPVVAMNHSG  VSDIIEHGVD  GFLAEDLTEF300
SSCLETLIEN  PELRTEFARK  AAEGLPKYDW  DRIYEQTCRV  YTGIINGKHH  NRSLEQESLS360
ESDYKKLLKK  TDQRE375

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help