CAZyme3D

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Entry ID

Information for CAZyme ID: AAM14318.1

Basic Information

GenBank IDAAM14318.1
FamilyGT77
Sequence Length340
UniProt IDQ9FXJ4(100,100)Download
Average pLDDT?86.77
CAZy50 ID23641
CAZy50 RepNo, AAF24543.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPSFNSSGNL  AVAVALLFAG  ALYFYFSSIT  VSDPMSDLLH  NVETRWTEYP  VDELEAVLDK60
AAMGNNKTVI  IAMVNKAYVE  EVEGGRTMLD  LFLESFWEGE  GTRPLLDHLM  LVAADQTSYD120
RCLFRRLHCY  KMDTDGVDLE  GEKVYMSKDF  IEMMWRRTHL  LLDVLSRGYN  LTFTDTDVMW180
LRSPFPRLSY  NESLDMQISV  DSIGLVGGHL  INTGFYHVRS  NNKTISLFQK  WYDMRLKSTG240
MKEQDVLKSL  LDSGFFNQLG  LNVGFLNTTE  FSGFCQDSHD  MGVVTTVHAN  CCRHILAKIS300
DLTLVLRDWK  RYKASHVNSN  WSPHVECGRS  WSDTHYIPKL  340

Predicted 3D structure by AlphaFold2 with pLDDT = 86.77 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT77(106-301)

MPSFNSSGNL  AVAVALLFAG  ALYFYFSSIT  VSDPMSDLLH  NVETRWTEYP  VDELEAVLDK60
AAMGNNKTVI  IAMVNKAYVE  EVEGGRTMLD  LFLESFWEGE  GTRPLLDHLM  LVAADQTSYD120
RCLFRRLHCY  KMDTDGVDLE  GEKVYMSKDF  IEMMWRRTHL  LLDVLSRGYN  LTFTDTDVMW180
LRSPFPRLSY  NESLDMQISV  DSIGLVGGHL  INTGFYHVRS  NNKTISLFQK  WYDMRLKSTG240
MKEQDVLKSL  LDSGFFNQLG  LNVGFLNTTE  FSGFCQDSHD  MGVVTTVHAN  CCRHILAKIS300
DLTLVLRDWK  RYKASHVNSN  WSPHVECGRS  WSDTHYIPKL  340

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help