CAZyme3D

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Entry ID

Information for CAZyme ID: AAL85033.1

Basic Information

GenBank IDAAL85033.1
FamilyGT17
Sequence Length390
UniProt IDQ9C9V4(100,100)Download
Average pLDDT?88.29
CAZy50 ID52980
CAZy50 RepNo, CAE6101335.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID3702
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusArabidopsis
SpeciesArabidopsis thaliana

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MWWMMGENGG  HYCSKKSDDL  CGTQESDRGF  GISRLCCILR  GVDLKSVLFL  LVIMPMCVLG60
VYINALKISY  FLRPLWESPP  KPFHEIPHYH  HENASMESLC  KLHGWRTREY  PRRVYDAVLF120
STEVELLTIR  WKELYPYVTQ  FVLLESNSTF  TGLPKPLVFA  GHRDEFKFIE  PRLTYGSIGG180
RFKKGEKNPF  YEEAYQRIAL  DQLLRIAGIT  DDDLLIMSDV  DEIPSRHTIN  LLRWCDDIPQ240
ILHLRLKNYL  YSFEFPVDDK  SWRASVHRYQ  TGKTRYAHYR  QSDVILADSG  WHCSFCFRRI300
SEFVFKMKAY  SHYDRVRFAH  YLNPKRVQRV  ICSGSDLFDM  IPEEYTFKDI  IGKMGPIPHS360
YSAVHLPAYL  LENAERYKFL  LPGNCLRDEE  390

Predicted 3D structure by AlphaFold2 with pLDDT = 88.29 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT17(95-382)

MWWMMGENGG  HYCSKKSDDL  CGTQESDRGF  GISRLCCILR  GVDLKSVLFL  LVIMPMCVLG60
VYINALKISY  FLRPLWESPP  KPFHEIPHYH  HENASMESLC  KLHGWRTREY  PRRVYDAVLF120
STEVELLTIR  WKELYPYVTQ  FVLLESNSTF  TGLPKPLVFA  GHRDEFKFIE  PRLTYGSIGG180
RFKKGEKNPF  YEEAYQRIAL  DQLLRIAGIT  DDDLLIMSDV  DEIPSRHTIN  LLRWCDDIPQ240
ILHLRLKNYL  YSFEFPVDDK  SWRASVHRYQ  TGKTRYAHYR  QSDVILADSG  WHCSFCFRRI300
SEFVFKMKAY  SHYDRVRFAH  YLNPKRVQRV  ICSGSDLFDM  IPEEYTFKDI  IGKMGPIPHS360
YSAVHLPAYL  LENAERYKFL  LPGNCLRDEE  390

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help