CAZyme3D

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Entry ID

Information for CAZyme ID: AAK61868.1

Basic Information

GenBank IDAAK61868.1
FamilyGT13
Sequence Length447
UniProt IDQ924C0(100,100)Download
Average pLDDT?88.20
CAZy50 ID3931
CAZy50 RepNo, AWP04987.1
Structure Cluster-
EC Number(s)2.4.1.101
Substrates(s)-

Taxonomy

Tax ID10029
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyCricetidae
GenusCricetulus
SpeciesCricetulus griseus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MLKKQSAGLV  LWGAILFVGW  NALLLLFFWT  RPAPGRPPSD  SAIDDDPASL  TREVFRLAED60
AEVELERQRG  LLQQIREHHA  LWRQRWKVPT  VAPPAWPRVP  ATPSPAVIPI  LVIACDRSTV120
RRCLDKLLHY  RPSAEHFPII  VSQDCGHEET  AQVIASYGSA  VTHIRQPDLS  NIAVPPDHRK180
FQGYYKIARH  YRWALGQIFN  KFKFPAAVVV  EDDLEVAPDF  FEYFQATYPL  LRTDPSLWCV240
SAWNDNGKEQ  MVDSSKPELL  YRTDFFPGLG  WLLMAELWTE  LEPKWPKAFW  DDWMRRPEQR300
KGRACIRPEI  SRTMTFGRKG  VSHGQFFDQH  LKFIKLNQQF  VSFTQLDLSY  LQREAYDRDF360
LARVYSAPLL  QVEKVRTNDQ  KELGEVRVQY  TSRDSFKAFA  KALGVMDDLK  SGVPRAGYRG420
VVTFQFRGRR  VHLAPPQTWE  GYDPSWN447

Predicted 3D structure by AlphaFold2 with pLDDT = 88.20 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GT13(24-440)

MLKKQSAGLV  LWGAILFVGW  NALLLLFFWT  RPAPGRPPSD  SAIDDDPASL  TREVFRLAED60
AEVELERQRG  LLQQIREHHA  LWRQRWKVPT  VAPPAWPRVP  ATPSPAVIPI  LVIACDRSTV120
RRCLDKLLHY  RPSAEHFPII  VSQDCGHEET  AQVIASYGSA  VTHIRQPDLS  NIAVPPDHRK180
FQGYYKIARH  YRWALGQIFN  KFKFPAAVVV  EDDLEVAPDF  FEYFQATYPL  LRTDPSLWCV240
SAWNDNGKEQ  MVDSSKPELL  YRTDFFPGLG  WLLMAELWTE  LEPKWPKAFW  DDWMRRPEQR300
KGRACIRPEI  SRTMTFGRKG  VSHGQFFDQH  LKFIKLNQQF  VSFTQLDLSY  LQREAYDRDF360
LARVYSAPLL  QVEKVRTNDQ  KELGEVRVQY  TSRDSFKAFA  KALGVMDDLK  SGVPRAGYRG420
VVTFQFRGRR  VHLAPPQTWE  GYDPSWN447

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help