CAZyme3D

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Entry ID

Information for CAZyme ID: AAK33657.1

Basic Information

GenBank IDAAK33657.1
FamilyPL16
Sequence Length337
UniProt IDQ9A0M7(100,100)Download
Average pLDDT?84.80
CAZy50 ID33082
CAZy50 RepNo, QBX30266.1
Structure Cluster-
EC Number(s)4.2.2.1
Substrates(s)host glycan

Taxonomy

Tax ID160490
KingdomBacteria
PhylumBacillota
ClassBacilli
OrderLactobacillales
FamilyStreptococcaceae
GenusStreptococcus
SpeciesStreptococcus pyogenes

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MSENIPLRVQ  FKRMKAAEWA  RSDVILLESE  IGFETDTGFA  RAGDGHNRFS  DLGYISPLDY60
NLLTNKPNID  GLATKVETAQ  KLQQKADKET  VYTKAESKQE  LDKKLNLKGG  VMTGQLKFKP120
AATVAYSSST  GGAVNIDLSS  TRGAGVVVYS  DNDTSDGPLM  SLRTGKETFN  QSALFVDYKG180
TTNAVNIAMR  QPTTPNFSSA  LNITSGNENG  SAMQLRGSEK  ALGTLKITHE  NPSIGADYDK240
NAAALSIDIV  KKTNGAGTAA  QGIYINSTSG  TTGKLLRIRN  LSDDKFYVKS  DGGFYAKETS300
QIDGNLKLKD  PTANDHAATK  AYVDKAISEL  KKLILKK337

Predicted 3D structure by AlphaFold2 with pLDDT = 84.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : PL16(65-337)

MSENIPLRVQ  FKRMKAAEWA  RSDVILLESE  IGFETDTGFA  RAGDGHNRFS  DLGYISPLDY60
NLLTNKPNID  GLATKVETAQ  KLQQKADKET  VYTKAESKQE  LDKKLNLKGG  VMTGQLKFKP120
AATVAYSSST  GGAVNIDLSS  TRGAGVVVYS  DNDTSDGPLM  SLRTGKETFN  QSALFVDYKG180
TTNAVNIAMR  QPTTPNFSSA  LNITSGNENG  SAMQLRGSEK  ALGTLKITHE  NPSIGADYDK240
NAAALSIDIV  KKTNGAGTAA  QGIYINSTSG  TTGKLLRIRN  LSDDKFYVKS  DGGFYAKETS300
QIDGNLKLKD  PTANDHAATK  AYVDKAISEL  KKLILKK337

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help