CAZyme3D

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Entry ID

Information for CAZyme ID: AAH88129.1

Basic Information

GenBank IDAAH88129.1
FamilyGH18
Sequence Length367
UniProt IDQ01460(100,100)Download
Average pLDDT?93.72
CAZy50 ID108086
CAZy50 RepNo, BAG37202.1
Structure Cluster-
EC Number(s)3.2.1.-
Substrates(s)chitin | peptidoglycan

Taxonomy

Tax ID10116
KingdomEukaryota
PhylumChordata
ClassMammalia
OrderRodentia
FamilyMuridae
GenusRattus
SpeciesRattus norvegicus

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MALSDLLELT  LLLLLPLLER  LSAEDCPCSE  ASLCRPIRHH  RDFEVFVFDV  GQKTWKSYDW60
SQITTVAVFG  KYDSELMCYA  HSKGARVVLK  GDVALKDIIN  PTFRASWIAQ  KVALAKAQHM120
DGINIDIEQE  VDCSSPEYEA  LTALVRETTE  GFHREIEGSQ  VTFDVAWSPK  GIDKRCYNYT180
GIADACDFLF  VMSYDEQSQI  WSECIAAANA  PYNQTLTGYG  DYLRMGISPR  KLVMGIPWYG240
YDYICLNLSK  DDVCAIAKVP  FRGAPCSDAA  GHQVPYRVIM  KQVNSSVSGS  QWNQDQQAPY300
YNYKDPTGRL  HQVWYDNPRS  ISLKAAFVKH  YGLRGIGMWN  ANCLDYSDDA  LAREQTEEMW360
GALRPRL367

Predicted 3D structure by AlphaFold2 with pLDDT = 93.72 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : GH18(80-342)

MALSDLLELT  LLLLLPLLER  LSAEDCPCSE  ASLCRPIRHH  RDFEVFVFDV  GQKTWKSYDW60
SQITTVAVFG  KYDSELMCYA  HSKGARVVLK  GDVALKDIIN  PTFRASWIAQ  KVALAKAQHM120
DGINIDIEQE  VDCSSPEYEA  LTALVRETTE  GFHREIEGSQ  VTFDVAWSPK  GIDKRCYNYT180
GIADACDFLF  VMSYDEQSQI  WSECIAAANA  PYNQTLTGYG  DYLRMGISPR  KLVMGIPWYG240
YDYICLNLSK  DDVCAIAKVP  FRGAPCSDAA  GHQVPYRVIM  KQVNSSVSGS  QWNQDQQAPY300
YNYKDPTGRL  HQVWYDNPRS  ISLKAAFVKH  YGLRGIGMWN  ANCLDYSDDA  LAREQTEEMW360
GALRPRL367

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help