CAZyme3D

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Entry ID

Information for CAZyme ID: AAH77483.1

Basic Information

GenBank IDAAH77483.1
FamilyCBM21
Sequence Length299
UniProt IDQ6DDQ5(100,100)Download
Average pLDDT?68.06
CAZy50 ID147806
CAZy50 RepNo, AAI20043.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID8355
KingdomEukaryota
PhylumChordata
ClassAmphibia
OrderAnura
FamilyPipidae
GenusXenopus
SpeciesXenopus laevis

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPVDMAVRIC  LAHSPPLKKF  LSPSDCRGRN  FVNRFKPLRP  CLSLKKESES  RSNEWNRSKS60
RNKKRVVFAD  SKGLSLTSVH  VFSEFKDESS  LDLQFDLIDL  EDITASLKLH  EEKNLILGFT120
QPSADYLQFR  NRLQKSFVCL  ENCSLQERSV  AGTIKVKNVN  YTKSVKIRIT  FNTWKSFVDV180
DCVYMNNVYG  STDSDTFSFV  IDIPPNIPSH  EKIEFCISYE  SEGQVFWDNN  DGQNYSVIRA240
EWKSDGVHTP  SPNKTDIASY  EYKKKPQNND  FDQFGSPRTS  AGLYPEWQSW  GKIGGSPYW299

Predicted 3D structure by AlphaFold2 with pLDDT = 68.06 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM21(135-237)

MPVDMAVRIC  LAHSPPLKKF  LSPSDCRGRN  FVNRFKPLRP  CLSLKKESES  RSNEWNRSKS60
RNKKRVVFAD  SKGLSLTSVH  VFSEFKDESS  LDLQFDLIDL  EDITASLKLH  EEKNLILGFT120
QPSADYLQFR  NRLQKSFVCL  ENCSLQERSV  AGTIKVKNVN  YTKSVKIRIT  FNTWKSFVDV180
DCVYMNNVYG  STDSDTFSFV  IDIPPNIPSH  EKIEFCISYE  SEGQVFWDNN  DGQNYSVIRA240
EWKSDGVHTP  SPNKTDIASY  EYKKKPQNND  FDQFGSPRTS  AGLYPEWQSW  GKIGGSPYW299

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help