CAZyme3D

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Entry ID

Information for CAZyme ID: AAF69788.1

Basic Information

GenBank IDAAF69788.1
FamilyCBM18, GH19
Sequence Length299
UniProt IDQ9M7F9(100,100)Download
Average pLDDT?91.60
CAZy50 ID39117
CAZy50 RepNo, WIA22355.1
Structure Cluster-
EC Number(s)-
Substrates(s)-

Taxonomy

Tax ID81977
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderBrassicales
FamilyBrassicaceae
GenusBoechera
SpeciesBoechera lyallii

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

RQAGGALCPN  GLCCSEFGWC  GDTEPYCKQP  GCQSQCTPGG  TPPGPTPTGD  LSGIISSSQF60
DDMLKHRNDA  ACPARDFYTY  NAFITAAKSF  PGFGTTGDTA  TRKKEIAAFF  GQTSHETTGG120
WASAPDGPFS  WGYCFKQEQN  PTSNYCEPSA  TWPCAPGKRY  YGRGPMQLSW  NYNYGLCGRA180
IGVDLLNDPD  LVANDAVIAF  KAAIWFWMTA  QPPKPSCHAV  IVGQWQPSDA  DLAAGRLSGY240
GVITNIINGG  LECGRGQDGR  VADRIGFYQR  YCNIFGVNPG  GNLDCYNQRP  FGNGLLGAA299

Predicted 3D structure by AlphaFold2 with pLDDT = 91.60 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(2-36)+GH19(53-285)

RQAGGALCPN  GLCCSEFGWC  GDTEPYCKQP  GCQSQCTPGG  TPPGPTPTGD  LSGIISSSQF60
DDMLKHRNDA  ACPARDFYTY  NAFITAAKSF  PGFGTTGDTA  TRKKEIAAFF  GQTSHETTGG120
WASAPDGPFS  WGYCFKQEQN  PTSNYCEPSA  TWPCAPGKRY  YGRGPMQLSW  NYNYGLCGRA180
IGVDLLNDPD  LVANDAVIAF  KAAIWFWMTA  QPPKPSCHAV  IVGQWQPSDA  DLAAGRLSGY240
GVITNIINGG  LECGRGQDGR  VADRIGFYQR  YCNIFGVNPG  GNLDCYNQRP  FGNGLLGAA299

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help