CAZyme3D

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Entry ID

Information for CAZyme ID: AAB70917.1

Basic Information

GenBank IDAAB70917.1
FamilyCBM12, GH18
Sequence Length700
UniProt IDO30678(100,100)Download
Average pLDDT?88.27
CAZy50 ID23152
CAZy50 RepNo, QDH69304.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID40324
KingdomBacteria
PhylumPseudomonadota
ClassGammaproteobacteria
OrderXanthomonadales
FamilyXanthomonadaceae
GenusStenotrophomonas
SpeciesStenotrophomonas maltophilia

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MPDPMMRSAV  TSISLQPAAR  HKRWLLALAL  AAAATPSLAL  AANCTGAPEW  NAAVIYLSGT60
TLQKGGVLYR  ANQDIWNAPP  DHPAGAPYYT  NLGACDGSGS  NQPPTVSLTA  PTAGASFTAG120
SSITVSANAA  DSDGSVSKVE  FFRGGTSLGI  DTSAPYSVTW  ANASAGSHTF  KAVATDNNNA180
VTSSATVSVT  VTASSNDTTP  PSVPGGLASP  SKTATTVNLV  WSAATDNSGG  SGVAGYDVYR240
NGSLVGSPSA  TQYTDGGLTA  STAYTYTVRA  RDNAGNASAQ  SGSISVTTAA  GGGGGGTKRV300
IGYFTQWGIY  GRNYRVKNID  TSGSAAKLTH  INYAFGNVRN  NRCEVGVTQA  SDPNTGVGGD360
AFADYTKAFG  AGESVSGSAD  TWDQPLRGNW  NQLKQLKAKH  PNVKVLISLG  GWTWSRGFSS420
AAQPANRQAF  VASCVDAYIK  GNLPVTDGAG  GVGAAAGVFD  GIDIDWEYPV  ACGLSCGTPA480
DNANYTALLA  EFRRQLDAVR  PGLLLTVAVG  AGIDKIRVTD  PAAYHPYLDF  INVMTYDFHG540
AWDPQTNHHS  ALFDSPADPS  TGDQKLYNSN  DAMEAFLSRG  VPASKLNLGI  GYYGRGWTGV600
ASGNNGLYKS  AGGAAPGTYE  AGIEDWKVLK  NLNWPVYTDT  VAKATWISNG  TTFWSVDTPA660
MVTEKMGYVK  AQGLGGAFFW  EFSGDDPQGT  LTKAISDGLN  700

Predicted 3D structure by AlphaFold2 with pLDDT = 88.27 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM12(48-80)+GH18(297-690)

MPDPMMRSAV  TSISLQPAAR  HKRWLLALAL  AAAATPSLAL  AANCTGAPEW  NAAVIYLSGT60
TLQKGGVLYR  ANQDIWNAPP  DHPAGAPYYT  NLGACDGSGS  NQPPTVSLTA  PTAGASFTAG120
SSITVSANAA  DSDGSVSKVE  FFRGGTSLGI  DTSAPYSVTW  ANASAGSHTF  KAVATDNNNA180
VTSSATVSVT  VTASSNDTTP  PSVPGGLASP  SKTATTVNLV  WSAATDNSGG  SGVAGYDVYR240
NGSLVGSPSA  TQYTDGGLTA  STAYTYTVRA  RDNAGNASAQ  SGSISVTTAA  GGGGGGTKRV300
IGYFTQWGIY  GRNYRVKNID  TSGSAAKLTH  INYAFGNVRN  NRCEVGVTQA  SDPNTGVGGD360
AFADYTKAFG  AGESVSGSAD  TWDQPLRGNW  NQLKQLKAKH  PNVKVLISLG  GWTWSRGFSS420
AAQPANRQAF  VASCVDAYIK  GNLPVTDGAG  GVGAAAGVFD  GIDIDWEYPV  ACGLSCGTPA480
DNANYTALLA  EFRRQLDAVR  PGLLLTVAVG  AGIDKIRVTD  PAAYHPYLDF  INVMTYDFHG540
AWDPQTNHHS  ALFDSPADPS  TGDQKLYNSN  DAMEAFLSRG  VPASKLNLGI  GYYGRGWTGV600
ASGNNGLYKS  AGGAAPGTYE  AGIEDWKVLK  NLNWPVYTDT  VAKATWISNG  TTFWSVDTPA660
MVTEKMGYVK  AQGLGGAFFW  EFSGDDPQGT  LTKAISDGLN  700

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help