CAZyme3D

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Entry ID

Information for CAZyme ID: AAB23374.1

Basic Information

GenBank IDAAB23374.1
FamilyCBM18, GH19
Sequence Length328
UniProt IDP08252(100,100)Download
Average pLDDT?88.80
CAZy50 ID48744
CAZy50 RepNo, ACS04172.1
Structure Cluster-
EC Number(s)3.2.1.14
Substrates(s)chitin

Taxonomy

Tax ID4097
KingdomEukaryota
PhylumStreptophyta
ClassMagnoliopsida
OrderSolanales
FamilySolanaceae
GenusNicotiana
SpeciesNicotiana tabacum

Protein Sequence:
90 < plddt <=100;
70 < plddt <= 90;
50 < plddt <= 70;
0 <= plddt <= 50;     Download help

MRLCKFTALS  SLLFSLLLLS  ASAEQCGSQA  GGARCPSGLC  CSKFGWCGNT  NDYCGPGNCQ60
SQCPGGPTPT  PPHPTRCDLG  SIISSSMFDQ  MLKHRNDNAC  QGKGFYSYNA  FINAARSFPG120
FGTSGDTTAR  KREIAAFFAQ  TSHETTGGWA  TAPDGPYAWG  YCWLREQGSP  GDYCTPSGQW180
PCAPGRKYFG  RGPIQISHNY  NYGPCGRAIG  VDLLNNPDLV  ATDPVISFKS  ALWFWMTPQS240
PKPSCHDVII  GRWQPSAGDR  ASNRLPGFGV  ITNIINGGLE  CGRGTDSRVQ  DRIGFYRRYC300
SILGVSPGDN  LDCGNQRSFG  NGLLVDTM328

Predicted 3D structure by AlphaFold2 with pLDDT = 88.80 ; Download help

pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue. A higher value indicates better prediction accuracy. More detail please see AlphaFold .

Residues were colored according to plddt ( blue-> high quality; red-> low quality ).

Carbohydrate binding residues Predicted by CAPSIF

Binding site residues are not predicted, since this is not a representative ID (CAZyme3D-ID50).

Full Sequence:
AA;
CE;
PL;
GH;
GT;
CBM;     Download structure help

dbCAN3 predicted domain(s) : CBM18(25-63)+GH19(81-313)

MRLCKFTALS  SLLFSLLLLS  ASAEQCGSQA  GGARCPSGLC  CSKFGWCGNT  NDYCGPGNCQ60
SQCPGGPTPT  PPTPPGGGDL  GSIISSSMFD  QMLKHRNDNA  CQGKGFYSYN  AFINAARSFP120
GFGTSGDTTA  RKREIAAFFA  QTSHETTGGW  ATAPDGPYAW  GYCWLREQGS  PGDYCTPSGQ180
WPCAPGRKYF  GRGPIQISHN  YNYGPCGRAI  GVDLLNNPDL  VATDPVISFK  SALWFWMTPQ240
SPKPSCHDVI  IGRWQPSAGD  RAANRLPGFG  VITNIINGGL  ECGRGTDSRV  QDRIGFYRRY300
CSILGVSPGD  NLDCGNQRSF  GNGLLVDTM329

Predicted CAZyme domains from dbCAN; Download help

Domains were colored according to CAZyme classification: (AA), (CE), (PL), (GH), (GT), (CBM), & (Null)

dbCAN3 server is a web server for automated Carbohydrate-active enzyme ANnotation.

Details:
dbCAN3 server integrates three state-of-the-art tools/databases for automated CAZyme annotation:
⋆HMMER search for CAZyme family annotation vs. dbCAN CAZyme domain HMM database
⋆DIAMOND search for BLAST hits in the CAZy database
⋆HMMER search for CAZyme subfamily annotation vs. dbCAN-sub HMM database of CAZyme subfamilies (derived from eCAMI classification of CAZyDB families)

For more details, please see dbCAN3.

Similarites between the same cluster seqeunces from DIAMOND; Download help