3D Structure for uvig_99788_CDS_0002 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.82 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment uvig_99788_CDS_0002 1 AcrIIA7 0.69 View Alignment uvig_99788_CDS_0002 M D F G D V I K E M K S N P S K R F A R K G W N G K G I F I Q L Q V P D E C S K M T H P Y I Y I D -T T G L ----Q -(60)
M FG ++ K + ARKGWNGKG P++ S + L
AcrIIA7 M T F G Q A L E S L K R -G -H L V A R K G W N G K G -M F I F M R P E D -S -L P T N -M I V N Q V K S L P E S F K R
uvig_99788_CDS_0002 --S D -N P D ---A P R -D L V -------------P -W -L A S Q T D M L A D D W E E V T E (112)
D LASQTDMLA DW V E
AcrIIA7 W V A N N H G D S E T D R -I K F T A Y L C M K A A D G T I V N G -W L A S Q T D M L A N D W V I V -E
uvig_99788_CDS_0002 2 AcrIIA4 0.59 View Alignment uvig_99788_CDS_0002 M D F G D V I K E M K S N P S K R F A R K G W -N -G K -G -I -F I Q L -Q V P D E C S K M T H P Y I Y I D T T G L Q (60)
M D+I+E K+ G + I + I +
AcrIIA4 M N I N D L I R E I K N K D Y T -V K L S G T D S N S I T -Q -L I I -R V N N ----D --G -N E Y V I S E S E N E
uvig_99788_CDS_0002 S ---D N P D A -P -R -D L V -P W L -A -S Q T D M L A D D -W E --E --V -T E (105)
S A + D
AcrIIA4 S I V E K F I S A F -K -N G W -N Q E -Y -E -D E E E F Y N D M Q T I T -L K S E L N
uvig_99788_CDS_0002 3 AcrIIA24 0.52 View Alignment uvig_99788_CDS_0002 M -D F G D V I K E M K S N P --------S -K R F A R K -G -W N G -K G I F I Q L Q V P D E C S K M T H P -Y -(60)
M ++KE K+N + I Y
AcrIIA24 M K K A Q Q L L K E I K T N N V S Y A I M D E -D N E I Y C N K -E -T -N -N I M D I Y G Y D N -E --N G -H F Y G
uvig_99788_CDS_0002 I Y I D -T T -G L Q S D N P D ---A P R D L V P W L -A S Q T D M L A D D W E E ------V ---T E (114)
+Y D G A ++ L D E
AcrIIA24 V Y G D V -V D G Q I D S R Y F S D D A I L N A I D K L L F L G D P I K R T D L P S D A D F K R T F F F E E
uvig_99788_CDS_0002 4 AcrIF18 0.51 View Alignment uvig_99788_CDS_0002 M D F G D V I K E M K S N P S K R F A -R K G -W -N -G K G I F I Q L Q V P D E C S K M T H P Y I -Y I D T T -G L Q (60)
M + S W G V + +
AcrIF18 M T T --I K A A ---Y I S ----K -D Q N W N -D G T -T T Y W F D V -----N --G E T F G V V H G G E S W N
uvig_99788_CDS_0002 S --D --N P D --A P R D L V -P W L A S Q T D M L A D D -W -E -E -V T E (101)
+ Q + E
AcrIF18 A K V V D C -D G A P ----S D Q -Y T V D Q F N I ----T -E -D -M I A E
uvig_99788_CDS_0002 5 AcrIIA12 0.50 View Alignment uvig_99788_CDS_0002 M D -F ---G -D V I K E M K S ---N P S K R F A R K G -W N G -K G I F I Q L -Q V P D E C S K M T H P Y I -Y I (60)
M DVI K+ N N + Q P+
AcrIIA12 M S K T M Y K -N D V I E L I K N A K T N N E E L L F T S V E R N T R E A A -T Q Y F R C P E K --------H V -S
uvig_99788_CDS_0002 D T T G -L Q S D N P D ------A P R D L V P W L A S Q -T -D M -L -A D D -W E E -V T E (109)
G +
AcrIIA12 -D A G V -Y Y G -E -D F E F D G -F E I ------F E D -D L -I -Y T -R S Y D K E E L N
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;