3D Structure for uvig_365371_CDS_0003 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.29 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment uvig_365371_CDS_0003 1 AcrIE6 0.75 View Alignment uvig_365371_CDS_0003 M -T D K E L L K D L K M ----R M S L Q M D L I N R Y T S V G R ----F ----A P D F Y Y E E L H Q M H A E H D (60)
M +D E+L D + + D L + +AE
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L -E I L -S P M Y T A V M V T Y D L I G K Q L A S R R A E L I
uvig_365371_CDS_0003 -K -L E R K ---L --K -A ----E -E (83)
LE +
AcrIE6 E -I L E E Q Y P G -H A A D L S I K N L C P
uvig_365371_CDS_0003 2 AcrIIC4 0.61 View Alignment uvig_365371_CDS_0003 M -T -D K E L L K ---D ---------------------L K M R M S ----L Q M D L I N R Y T S V G R -(60)
M L D + +
AcrIIC4 M K I T S -S N F A T I A -T S E N F A K L S V L P K N H R E P I K G L F K S A V E Q F S S A R D F F K N -E N Y S K E
uvig_365371_CDS_0003 ---F A P D -F Y -Y E -E L -H Q M H -A E H D K L E -R K L K A E E (97)
+ D + +
AcrIIC4 L A E K F N K E -A V N -E -A V E -K L Q K A I D L -A E K -Q G I Q F
uvig_365371_CDS_0003 3 AcrIF23 0.58 View Alignment uvig_365371_CDS_0003 M -T D K E L L K ---D -------------------L K --------------------------(60)
M + L
AcrIF23 M T N F Q T W L D S A D -I P V Q Q N G Q W I D L E T G I A Y D P -S Y N Y A A N T R R A S L S P R G I D A R A V A K T
uvig_365371_CDS_0003 -----------------M ----R M S -----------L -Q M ----D -L I N R Y T S V G R -F -- (120)
++
AcrIF23 F G G R A L T G T A R Q K E W A E -K I R A E K V Q Q M N Q D Q A E M A C D -P S G L L -T A A K F W I E N R -N D S A
uvig_365371_CDS_0003 -A P D F Y Y E E L H Q M H A E H ------------D -K -L E R K L K A ---E --E (167)
+ A H + A
AcrIF23 Q E I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K V -A -K I A A E Y N A L T A R W G F
uvig_365371_CDS_0003 4 AcrIE1 0.57 View Alignment uvig_365371_CDS_0003 M --T ---D K E L L -K ---D --------------L -K -------M -R -M S -L Q M D L I N R -Y T (60)
M +L + S Q +
AcrIE1 M E K K L S D A Q V A L V A A W R -K Y P D L R E S L E E A A S I L -S L I V F Q A E T -L -S D -Q A N E L A N Y I R
uvig_365371_CDS_0003 S V G R F A P D F ---Y -Y -E -E -L -H Q -M H A E H D K ---L E R -K -L -K A ----E -E (112)
G + + +
AcrIE1 R Q G L E E A E G A C R N I -D -I -M -R A -K W V E V C G E V N Q H G I R -V -Y G D A I D R D V D
uvig_365371_CDS_0003 5 AcrIIA28 0.55 View Alignment uvig_365371_CDS_0003 M -T ------D K E L L -K D ----L -K -M -R M S L Q M D L I N R Y T S V G R ----------F A P D F Y (60)
M T EL D + D + +
AcrIIA28 M K T I F T K K Q T E E L -L N D I S I E K Q -K -E L F N S M H D F R S Q H A K E A -R I P G W S D K Y N K L E K K M
uvig_365371_CDS_0003 Y E E L H Q M H -A -E H D K L E -----R K -L K -A --E -E (94)
+ D LE L
AcrIIA28 L S D F E E V T G -I K Y D T L E S E L I W D -N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;