3D Structure for uvig_287661_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.84 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment uvig_287661_CDS_0004 1 AcrIIA7 0.70 View Alignment uvig_287661_CDS_0004 M K N D G L M D F -G N A L D L M K Q G V K V S R L G W N G E D G K G M F L Y I V Q P Y S Q Y T P --Q -T ------(60)
M +AL+ K G V R GW G P + +
AcrIIA7 M T -----F -G -Q A L E S L K R G H L V A R K G W -N --G -K G M F I F M R P E D S L P T N M I V N Q V K S L P
uvig_287661_CDS_0004 D -A G -E -H L A ----D A -A -T N T V R C D G F I V M K N K S G N V V P -W V P S Y A D L L A E D W L C F M F D (120)
+ +A D T ++ + MK G++V W+ S D LA D
AcrIIA7 E S F -K -R W V A N N H G D -S -E T D R I K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D -------
uvig_287661_CDS_0004 E -E -V P E E L K G V V M (134)
V
AcrIIA7 W V -I -------V -E
uvig_287661_CDS_0004 2 AcrIIA12 0.52 View Alignment uvig_287661_CDS_0004 M K N D G L M D F G N A L D L M K Q G V K V S R L G --W N G E D G K G M F L Y I V Q P Y S Q Y T P Q T D A G E H -L A (60)
M M +++L K V T A
AcrIIA12 M S -K -T M Y K N D V I E L I K ------N -A K T ----N N E E L L F T S V E -R --N T R -E A A T Q -Y F R
uvig_287661_CDS_0004 D A A T N T V R C D G F I V M K N K S G N V V P W V P S Y A D -L L A E D W L C F M F D E E V P E E L K G V V M (116)
V G +D E +
AcrIIA12 C P E K -H V S D A G V -Y -Y G E D F E F D G ----F E -I -F E D D L -I Y T R -S -Y D K E ---E L N
uvig_287661_CDS_0004 3 AcrIIA4 0.51 View Alignment uvig_287661_CDS_0004 M K N D G L M D F G N A L D L M K Q -G V K V S R L G W N G E D G K G M F L Y I V Q P Y S Q Y T P Q T D A G E H L A D A (60)
M ++ K+ V G D
AcrIIA4 M N --I -N ---D L I R E I K N K D Y T V K L S G T ---D S ---------------------------
uvig_287661_CDS_0004 A T N T V R C D G F I V M K N K S G N V V P W V -P S Y A D L ----L ----A E D W L C F M -F -D E E ----V -(120)
+ I+ N GN + W +EE
AcrIIA4 -N ---S I T Q L I I R V N N D G N E Y V I S E S E N E S I V E K F -I S A F K N G W N Q E Y E -D E E E F Y N D -M
uvig_287661_CDS_0004 P -E -E -L K G V V M (132)
LK +
AcrIIA4 -Q T I -T L K S E L N
uvig_287661_CDS_0004 4 AcrIF18 0.50 View Alignment uvig_287661_CDS_0004 M K N D G L M D F G N A L D L M K Q G V K V S R L G W N G E D G K G M -F L Y I V Q P Y S Q Y T P Q T D A G E H L A D A (60)
M +
AcrIF18 M T -T -I -K A A Y ------I ---S K -D Q N W -N -D G -T T T Y W F D V ------------------
uvig_287661_CDS_0004 A T N T V R C D G F I V M -K N -K S -G N V -V -P W -V -P S Y A -D L -L A E D -W -L C F -M -F -D E E V P E (120)
+ D E
AcrIF18 ------N G E T F G V V H -G -G E S -W N -A K -V -V D C D -G A -P --S D Q -Y -T V D -Q -F -N I -T E
uvig_287661_CDS_0004 E L K G V V -M (128)
+
AcrIF18 D M I ---A E
uvig_287661_CDS_0004 5 AcrIF9 0.49 View Alignment uvig_287661_CDS_0004 M K N D G L M D F G N A L D L M K Q G V K V S R L G W N G E D G K G M -F L Y I V Q P Y S Q -Y T P Q T D A G E H L A D (60)
MK + + + + + A +
AcrIF9 M K -A -A Y I I ---K E ------------V Q N I N S E R E G T Q I E --A T -S L ----S Q A K R I A S K
uvig_287661_CDS_0004 A A T N T -V -R C D G F I V M K N K S G N V V P W V P S Y A D L L A E D W -L C F M F -D E E V P E E L K G V V M (118)
+ + +
AcrIF9 ----E Q -C F H G T V M R I E T V N ----------------G L W -L A Y K E --D G -K R W V D -C Q
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;