3D Structure for uvig_178772_CDS_0004 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 88.39 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment uvig_178772_CDS_0004 1 AcrIIA8 0.71 View Alignment uvig_178772_CDS_0004 M K Y S L Q G -Q T V I I Y E R D D D G N -I L Y E G -Y T D T E G N F I P Y L D D E G N K I P K V L E E K T G F S E P (60)
M + + G K
AcrIIA8 M S I F T D M I P -A E L L ------I N ----E Y ----------K K G Q S G A K H D -N ------Y V -S
uvig_178772_CDS_0004 V D F K A N -I S F S G G E A Q -S K E Y G F -D T A D F D A I L L T D R N M L P I Q K G D L I W L N S K P T Y T S D K (120)
V I + + + T K I +
AcrIIA8 V G R I M V A I Y K N N S -F K N T G T V K -Y Q D -S T H S G I -T M S K V F I D G K E Y R I D I ----------
uvig_178772_CDS_0004 L V D E -T S A D F T I V G I K P A L Y S -T K Y -M L -K -A --V V -K (158)
+ + + +
AcrIIA8 ----D -T Q H Y E V Q D F D T S ---G -R -Q T T L I L K R I D L Y G
uvig_178772_CDS_0004 2 AcrVIA3 0.44 View Alignment uvig_178772_CDS_0004 M K Y S L -Q G Q T V I I Y E R D -D D G N I L Y E G Y T D T E G N F I P Y L D D E G N K I P K V L E E K T G F S E P V (60)
M
AcrVIA3 M F K E -F -L E ---K -C L -R -------------------------------------Y G ---
uvig_178772_CDS_0004 D F K A N I S F S G G -E A Q S K E Y G F -D -T A -D F D A I L L T D R N M L P I Q K G D L I W L N S K P T Y T S D K (120)
D + + ++ ++ L
AcrVIA3 ----------N L -Y I -----L E -E -T G D R K K V K R I S K R H G K V T E A S V L -L F ---------
uvig_178772_CDS_0004 L V D E -T S A -D -F T I -V G I K ---P -A -L --Y --S -T K Y M L -K -A V V K (166)
D T I L K
AcrVIA3 --D -S -G T K -R T T -I N E I Y L N S Q G -Y -F I -I R -D -Q K R L K -L E K F K
uvig_178772_CDS_0004 3 AcrIIA22 0.41 View Alignment uvig_178772_CDS_0004 M K Y S L Q G Q T V I I Y E R D D D G N I L Y E G Y T D T E G N F I P Y L D D E G N K I P K V L E E K T G F S E P V D F (60)
M T + +
AcrIIA22 M V ---V E E T R D --L A E ---------------T -------A ----------------D --C
uvig_178772_CDS_0004 K A N I S F S G G E A Q S K E Y G F D T A D F D A I L L T D R N M L P I Q K -G D L I W L N S K P T Y T S D K L V D E T (120)
+ +AI L D + + + +
AcrIIA22 V V --------------------I E A I -L V D D ---G -L R Y R Q -L S V G I --K D E -------N
uvig_178772_CDS_0004 S A D F T I V G I K P A L Y S T K -Y M L K A V V K (146)
I+ I V+
AcrIIA22 ---G D I I R I V -------P -I -S T V L I
uvig_178772_CDS_0004 4 AcrIF9 0.40 View Alignment uvig_178772_CDS_0004 M K Y S L Q G Q T V I I Y E R D D D G N I L Y E G Y T D T E G N F I P Y L D D E G N K I P K V L E E K T G F S E P V D F (60)
M K
AcrIF9 M --------------------------------------------K --------------
uvig_178772_CDS_0004 K A N I S F S G G E A Q S K -E Y G F -D -T A D F D A I L L T D R N M -L P I Q K G D L I W -L N S K P T Y T S D K L (120)
A I + + + +
AcrIF9 A A Y I I -K E -V Q N --I ----N -S -E R E G T Q I E A T -S L S Q A K R I A S ---K -E Q ------C --
uvig_178772_CDS_0004 V D E T S A D F T I V G I K P A L Y S T K Y M L -K A -V -V K (152)
I + + K +
AcrIF9 -F -H G T V M R I E T V N G L W L A Y K E D G K R W V -D C Q
uvig_178772_CDS_0004 5 AcrIF8 0.39 View Alignment uvig_178772_CDS_0004 M K Y S L Q G Q T V I I Y E R D D D G N I L Y E G Y T D T E G N F I P Y L D D E G -N K I P K V L E E K T G F S E P V D (60)
M + + D
AcrIF8 M A -R I A P N ----E ------------------------D ---S -T --------------M -
uvig_178772_CDS_0004 F K A N I S F S G G E A -Q S K E ---Y G F D T A D F D A I L L T D R N M L P I Q K G D L I W L N S K P T Y T S D K L (120)
A I F+ A G F + + L + +
AcrIF8 S T A Y I I F N S S V A A V V D T E I A N G A N V -T F S T V T V -K E E I N A N R -D --F N L V N A ---Q -N G K
uvig_178772_CDS_0004 -V D E -T -S -A D F T I V G I K -P -A L Y S T K Y -M L K -A V -V K (158)
+ Y + +K
AcrIF8 I -S R A -K -R W G N E ---A -S -K C E Y F G R E I N P T E F -F I K
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;