3D Structure for ivig_4404_CDS_0038 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.92 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_4404_CDS_0038 1 AcrIE6 0.73 View Alignment ivig_4404_CDS_0038 M S -I E S E L A Y L K S ----A K N K V L E F I D E T P A E ------N V I S L A S W K S Q L A K L D K K I -N E (60)
M+ L + + + + + ++ QLA +
AcrIE6 M N N D T E V L E Q Q I K A F E L L A D E L K D R L P T L E I L S P M Y T A V M V T Y D L I G K Q L A S R R A E L I E I
ivig_4404_CDS_0038 L ---E ----Q -R -A ---S Q (79)
L +
AcrIE6 L E E Q Y P G H A A D L S I K N L C P
ivig_4404_CDS_0038 2 AcrIIC4 0.64 View Alignment ivig_4404_CDS_0038 M -S I E S E L ------A ------Y L K ----S -------A K N -K V L E F I D E ----T P A -E --N (60)
M S L + +
AcrIIC4 M K I T S S N F A T I A T S E N F A K L S V L P K N H R E P I K G L F K S A V E -Q F S S A R D F F K N -E N Y S K E L
ivig_4404_CDS_0038 -V -I S L -A -S W -K -S Q L -A K L D K K I N E L E Q R A S -Q (95)
KL K I +E
AcrIIC4 A -E K F N K -E -A V -N E A -V E K L Q K A I D L A E K Q G I Q F
ivig_4404_CDS_0038 3 AcrIF23 0.58 View Alignment ivig_4404_CDS_0038 M -S I ---E S -E L A Y L K --------------S A K N --------------------------(60)
M + +
AcrIF23 M T N F Q T W L D S A D I -P V Q Q N G Q W I D L E T G I A --Y -D P S Y N Y A A N T R R A S L S P R G I D A R A V A
ivig_4404_CDS_0038 --------------------------K -V L -E F I -D -E --------T P -A --------E - (120)
AcrIF23 K T F G G R A L T G T A R Q K E W A E K I R A E K V Q Q M -N Q D -Q -A -E M A C D P S G L -L -T A A K F W I E -N
ivig_4404_CDS_0038 ---N ---V ----I S L A S W K S Q L --------A K -L -D K -K -I -N -E -L -E -Q -R A ---S -Q (180)
+ + + Q A
AcrIF23 R N D S A Q E I A G F V M Q Q K A L L A Q H R S A K A A G Q A D K -V -A K -I -A -A -E -Y -N -A L T A R W -G F
ivig_4404_CDS_0038 4 AcrIE1 0.54 View Alignment ivig_4404_CDS_0038 M -S ----I E S E L ----A --------Y -L K -S --------A K -N -------K V L E F I D E T P (60)
M + L L + + +
AcrIE1 M E K K L S D A Q V A L V A A W -R K Y P D L R E -S L -E -E A A S I L S L I -V -F Q A E T L S D Q A N E L A N Y I
ivig_4404_CDS_0038 -A E N V ---I S L -A S W -K -S -Q L -A K L D K K I N ---E L ----E Q R -A ---S Q (110)
+ + AK +
AcrIE1 R R Q G L E E A E G A C -R N I -D -I M -R A K W V E V C G E V N Q H G I R V Y G D A I D R D V D
ivig_4404_CDS_0038 5 AcrIIA28 0.54 View Alignment ivig_4404_CDS_0038 M -S --I ----E -S E L A ----Y -L -K -S -A K N K V L E F I D E T P A ------E -N -V ----I S L (60)
M + L + N +F
AcrIIA28 M K T I F T K K Q T -E E L L N D I S I E K -Q -K -E L F N S M H D F R S Q H A K E A R I P G -W -S -D K Y N K L E
ivig_4404_CDS_0038 A S W K S Q L A K L D -K K I N E ---------L E Q R A -S -Q (95)
S + K L ++ +
AcrIIA28 K K M L S D F E E V T G I K Y D T L E S E L I W D N L S N K F L Y N S
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;