3D Structure for ivig_4070_CDS_0068 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 94.73 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_4070_CDS_0068 1 AcrIIA7 0.76 View Alignment ivig_4070_CDS_0068 M S F G Q A I V A L V Q G K N V A R E G W N G K N M F L Y L -I E G ------------N K -L S K G L G Y G Y G E (60)
M+FGQA+ L G+ VAR GWNGK MF+ L
AcrIIA7 M T F G Q A L E S L K R G H L V A R K G W N G K G M F I F -M R P E D S L P T N M I V N Q V K -S L P E S F K R W V A N
ivig_4070_CDS_0068 Y -V G -V ----E -P -S -F V D T I A M K T A Q N T I V V G W L A S Q T D M L A N D W V I L N (110)
F + MK A TIV GWLASQTDMLANDWVI+
AcrIIA7 -N H -G D S E T D -R -I -K F T A Y L C M K A A D G T I V N G W L A S Q T D M L A N D W V I V E
ivig_4070_CDS_0068 2 AcrIIA4 0.53 View Alignment ivig_4070_CDS_0068 M S F G Q A I V A L V Q -G K N V A R E G W N --G K -N -M F L Y L I E G N K L S K G L G Y G Y G E Y V G -V -E -P (60)
M+ +I + + +V G + +
AcrIIA4 M N I N D L I R E I K N K D Y T V K L S G T D S N S I T -Q L I I R V N N D G N E Y V I S E ---S ----E -N -E -
ivig_4070_CDS_0068 S F V D T I A M K T -A -Q N -T I V V G W L A S Q T D M L A -N ---D -W V I L N (103)
S V+ + + LN
AcrIIA4 S I V E K F I S --A -F K -N -G W N Q E Y E D E E E F Y N D M Q T I T L K S E L N
ivig_4070_CDS_0068 3 AcrIF18 0.53 View Alignment ivig_4070_CDS_0068 M S F G Q A I V A L V Q G K N -V A R E G W -N G -K N M F L Y L I E G N K L S K G L G Y G Y G -E -Y V G V E -P S F (60)
M+ ++ ++ N + + G GV
AcrIF18 M T --T I -K ---A A Y -I -S K D Q N W N D G T T T Y W F D V -----------N -G E -T -F G V V H G -G
ivig_4070_CDS_0068 V D -T I A M K T A Q N T I V V G W L A S Q T D M L A N D W V I L -N (95)
++ + Q +++ +
AcrIF18 E S W N A K V V D C D G A P S D Q Y T V D Q F N --I T E D -M I A E
ivig_4070_CDS_0068 4 AcrVIA3 0.52 View Alignment ivig_4070_CDS_0068 M S F G Q A I V A L -V Q G K N V A R E G W N G K N M F L Y -L -I -E G N K L S K G L G Y G Y G E -Y V G -V E P S F (60)
M + G + E +G + K++ +
AcrVIA3 M F -K E F L E K C L R Y G N L Y I L E E -T G D R K K V K R -I S K R H G K V T E A S V L L F D -S -G -T K -R T T
ivig_4070_CDS_0068 V D T I A M K T A Q N T I -V V G W L A S Q T D M L A N D -W V I L N (95)
+ I + Q + L
AcrVIA3 I N E I Y L N S -Q G Y F I I R -D -Q --K R -L K --L E -K F K
ivig_4070_CDS_0068 5 AcrIF9 0.49 View Alignment ivig_4070_CDS_0068 M S F G Q A I V A L V Q G K N V -A R E G W -N --G -K -N M F L Y L I E G N K L S K G L G Y G Y G E Y V G -V E P S (60)
M ++ IE + L + E
AcrIF9 M K A -A -Y I I -------K -E -V Q N I N S -E -R E G T Q --I E A T S L -----S Q A K R I A S K -E Q C
ivig_4070_CDS_0068 F -V D T I A M K T A Q N T I V V G W L A S Q T D M L A N D -W V I L N (96)
F T++ + WV +
AcrIF9 F H G T V M R I E T V N G L W L -A Y K E D G -----K -R W V D C Q
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;