3D Structure for ivig_3909_CDS_0007 Protein Sequence:
90 < plddt <=100 ;
70 < plddt <= 90 ;
50 < plddt <= 70 ;
0 <= plddt <= 50 ;
Predicted 3D structure by Alphafold
with pLDDT = 95.19 ;
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pLDDT is for per-residue accuracy of the structure, which representes the quality of the residue.
A higher value indicates better prediction accuracy. More detail please see:
Alphafold .
Residues were colored according to plddt ( blue-> high quality ; red-> low quality ).
Protein ID Rank TMvec Hit TM Score Sequence Alignment ivig_3909_CDS_0007 1 AcrIIC7 0.72 View Alignment ivig_3909_CDS_0007 V -N -W F E Q F K K D -F ----------------G ---------------------------F -(60)
E F K
AcrIIC7 M N V I E A E K F L K P K T N T T T F K F L V D E K L T A N L T G M K P I G R I D T Q R F L E S H R A S E F K I L L D N
ivig_3909_CDS_0007 ----------T S N Y Q I S K K T G I T A S S L T R L N N S D D -W K N V K I G T M I L L A L S V D K T L D Q L V (120)
++Y ++K G++ S++++L + + + +A +++ ++
AcrIIC7 P L K E L L N Y Y G L T Q Y Y L Q K E V G L S Q S T V S K L I S D N R P I G S F Q F A V L L K I A E A T N R S V G E V A
ivig_3909_CDS_0007 S H L Y K N D K K R D S E K (134)
L
AcrIIC7 D Q L K E F N -D L R D -A
ivig_3909_CDS_0007 2 AcrVIA6 0.67 View Alignment ivig_3909_CDS_0007 V N ----------W F E Q F K K D F ----G F T S N Y Q I S K K T G I T A S S L T R L N N S D D W K N V K I G T (60)
F T+ G+TA+++ + +
AcrVIA6 M A D K V K S I Q P G P I F Y D V F L V Y L R V I -G T N L K D W C A P H G V T A T N A K S A A T G G W ----N G T K
ivig_3909_CDS_0007 M I L L A L S V D -K T L D -Q -L V S H L Y K N D K K R D S E K (93)
+L + +LY +R+
AcrVIA6 A R A L R Q K M I D E V G E E -T -F L R L Y T E R L R R E A -A
ivig_3909_CDS_0007 3 AcrIB5 0.66 View Alignment ivig_3909_CDS_0007 V -N W F E Q F K K D F G F T S N Y Q I S K K T G I T A S S L T R L N N S D D W K N V K I G T M I L L A L S V D K T L D (60)
+ + YQ+ TG+ +++ + + ++ + + L+A T+
AcrIB5 M A G F I K K Y L D S R -G W T I Y Q L G N A T G L A H Q T I R S A D S K -T V D Q L S A K N V R L I A E V F H F T A G
ivig_3909_CDS_0007 Q L V S H L Y K -----------------------------------N ----------------(120)
++ Y
AcrIB5 E I L D E F Y E I E E E I T N D E I L K E L T T V F E K H G H N T D E I S S E L L D G E T I K L D M T D D N I T K L A D
ivig_3909_CDS_0007 -------D --------K K -R D -S E K (145)
AcrIB5 A V N A T E H F T A Y L D S S T D Y M I V E A T Q
ivig_3909_CDS_0007 4 AcrIIA1 0.62 View Alignment ivig_3909_CDS_0007 V N --W F E Q F K K D F G F T S N Y Q I S K K T G I T A S S L T R L N N S D D W K N V K I G T M I L L A L S V D K T L (60)
+ + F K + YQ+SK TGI+ ++L N + L L ++
AcrIIA1 M T I K L L D E F L K K H -D L T R Y Q L S K L T G I S Q N T L K D Q N E K -P L N K Y T V S I L R S L S L I S G L S V
ivig_3909_CDS_0007 D Q L V S H L Y -K ------------------------------------------------N -(120)
++ L
AcrIIA1 S D V L F E L E D I E K N S D D L A G F K H L L D K Y K L S F P A Q E F E L Y C L I K E F E S A N I E V L P F T F N R F
ivig_3909_CDS_0007 ------------------D ----K K -R -D S E K (152)
K + +
AcrIIA1 E N E E H V N I K K D V C K A L E N A I T V L K E K K N E L -L
ivig_3909_CDS_0007 5 AcrIB7 0.59 View Alignment ivig_3909_CDS_0007 V N W F E Q F K K D F G F T S N Y Q I S K K T G I T A S S L T R L N N ---S -D -D -W -K N V K I G T M I L L A L S (60)
F K + K GI SS+ L N S + +AL+
AcrIB7 M R T F K M L L K K Y -N V E I K D V I Q K G G I D K S S I Y T L A N K E K S K -P -D -S S R I T G A M L Q S V A L T
ivig_3909_CDS_0007 V D K T L D Q ----L -V -S -H -L -Y K ------------------N ------------------(120)
V + +
AcrIB7 V G I D P G T V I N D -L -L -Y -L -E -Q E V G I L A E E M Q N T L V N V I Q T E G K E A A L K F L P G F I F K V V
ivig_3909_CDS_0007 --------D -------K K R D S E K (143)
AcrIB7 E Q E E F K E E F E R Y Y S E F I L A Y K -G
Amino Acid Color Coding: Negatively charged: D ,E ; Positively charged: H ,R ,K ; Hydrophobic: A ,I ,L ,V ; Polar: N ,Q ,S ,T ; Cyclic: P ; Aromatic, hydrophobic: F ,W ; Aromatic, polar: Y ; Tiny, hydrophobic: G ; Sulfur-containing, polar: C ; Sulfur-containing, hydrophobic: M ;